Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_M12
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 224 6e-59
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 219 1e-57
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 219 2e-57
06_01_0351 + 2537022-2538281 29 4.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 5.6
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.6
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.5
11_06_0682 - 26253319-26253575,26254009-26254114 27 9.9
09_02_0528 + 10253372-10254556 27 9.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 9.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 224 bits (547), Expect = 6e-59
Identities = 104/163 (63%), Positives = 124/163 (76%)
Frame = +3
Query: 132 PTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 311
P P + LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI K
Sbjct: 51 PHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAK 110
Query: 312 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 491
T E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLI
Sbjct: 111 TGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLI 170
Query: 492 KVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS 620
K ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I S
Sbjct: 171 KANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKS 213
Score = 82.2 bits (194), Expect = 3e-16
Identities = 33/44 (75%), Positives = 36/44 (81%)
Frame = +2
Query: 29 WREAXKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 160
W KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 17 WARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPL 60
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 219 bits (536), Expect = 1e-57
Identities = 103/181 (56%), Positives = 126/181 (69%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
PKH L P P + +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 611
+PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGV 194
Query: 612 I 614
I
Sbjct: 195 I 195
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 160
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 219 bits (534), Expect = 2e-57
Identities = 102/181 (56%), Positives = 126/181 (69%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
PKH L P P + +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 611
+PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGV 194
Query: 612 I 614
I
Sbjct: 195 I 195
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 160
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>06_01_0351 + 2537022-2538281
Length = 419
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 20 CPTWREAXKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKL 142
C WR + + L L P W+L + GG + P H+L
Sbjct: 72 CRPWRSSARVELDLLPPPLPWLLLR-GGAFITLPDGAAHRL 111
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 138 LWGPVDGLGAYTPPSLSNIHALGAFKR 58
L G G+G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 324 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 428
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 450 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 584
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 83 MLDKLGG--VYAPRPSTGPHKLRECL---PL---XDFPEESSEVCFDRKRSPENCETTP 235
ML+KL V PRP TG KLR+ PL D E+S + R +S TTP
Sbjct: 1 MLEKLWDDVVAGPRPETGLEKLRKAATTRPLVINKDGDGEASGAAYKRTQSMPTTPTTP 59
>09_02_0528 + 10253372-10254556
Length = 394
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 586 AVTWGVWAPSCPRXTSRLLRHC 651
A+ W V+ PS PR LL HC
Sbjct: 154 ALCWVVFVPSSPRSPYSLLAHC 175
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 293 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 198
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,589
Number of Sequences: 37544
Number of extensions: 414841
Number of successful extensions: 1175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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