Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_M12
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   211   3e-55
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF099914-9|AAC68759.2|  273|Caenorhabditis elegans Math (meprin-...    29   3.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.0  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  211 bits (516), Expect = 3e-55
 Identities = 100/175 (57%), Positives = 123/175 (70%)
 Frame = +3

Query: 126 PVPTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 305
           P P     + P  +FLRNRLKYAL   E  KI+ QR+++VDGKVRT   +P GFMDVV+I
Sbjct: 32  PGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAI 91

Query: 306 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 485
           E+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP
Sbjct: 92  ERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDP 151

Query: 486 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSARXIPAPSTL 650
            +KVND+I  +I+T KI D +KFE GNL  +TGGRN+GRVG I     +P  S +
Sbjct: 152 HVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDI 206



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 32/42 (76%), Positives = 34/42 (80%)
 Frame = +2

Query: 44  KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLXDF 169
           KKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL  F
Sbjct: 5   KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLF 46


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 348 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 479
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AF099914-9|AAC68759.2|  273|Caenorhabditis elegans Math
           (meprin-associated traf homology)domain containing
           protein 18 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 227 FHNFQDFVSGQSILQTIPQE-NXPGASTRATCGDRLTVSVHTHRQVC 90
           F N   FV G+ +   I +  N P   T + C +RL + ++  + VC
Sbjct: 151 FGNISRFVRGEQVYSDIEEHYNIPWRITISKCHERLGIYLYCKKAVC 197


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 505  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 341
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,990
Number of Sequences: 27780
Number of extensions: 335576
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)