Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_M01
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    51   1e-07
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   0.51 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   4.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   8.4  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +3

Query: 171 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVA 302
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVS 54



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 313 TKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 462
           +K+A+ A I FS                  DWLRVV++    YELRY+N+
Sbjct: 59  SKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNV 108


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 155 LDAFAADFATLHSFFASLLVQLGFLS 78
           +D +  DFAT H+ + + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 216  DVGNFEKYLKEHVKVEGKTNNLSNHVVVAXA*DESRYHRRHSFFKEVPE 362
            + GN +KY + ++KV GK ++   H       ++S+    +  F +V +
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTHHTPGAFPNDSKNKELNRHFLKVDD 1003


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 171 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 281
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 238 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 110
           ++ +    ++    G +++I    ++F  L  L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 368 KYFRYLFEKGMSAVIATFVLCXG 300
           K+F+Y+  +G   +   FVLC G
Sbjct: 397 KWFKYVDREGRPLLAMAFVLCFG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,635
Number of Sequences: 5004
Number of extensions: 29494
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)