Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_L21
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   137   8e-34
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   1.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.1  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   9.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   9.5  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  137 bits (332), Expect = 8e-34
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +3

Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 464
           I+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+   
Sbjct: 74  ILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVG 133

Query: 465 VLPPNWKYESSTASALVA 518
            LPP WKYES+TASALVA
Sbjct: 134 ALPPTWKYESATASALVA 151



 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 44/65 (67%), Positives = 51/65 (78%)
 Frame = +2

Query: 89  KGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 268
           KGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG
Sbjct: 9   KGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITG 68

Query: 269 KKILR 283
           +KI+R
Sbjct: 69  QKIMR 73


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 363 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 464
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 330 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 482
           YYL KKA  + +    N  +K+SK   I +E +  +       +  L  +W
Sbjct: 202 YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSW 252


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 97  LPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFT 237
           +P G   PP  P ++    R+      Q W+    S++NW N +G+T
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYT 265


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 53  KPQTWVVCTLLDKGISQSALPYRRSVPTWLKLTADD 160
           KP TW VC    + + Q   P+RR    W  +  D+
Sbjct: 543 KPDTWHVCITSYQLVLQDHQPFRRK--KWQYMILDE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,120
Number of Sequences: 5004
Number of extensions: 40663
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)