Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_L20
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 31 0.11
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 3.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 4.3
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 4.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 5.7
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 25 5.7
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 25 7.5
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 25 7.5
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 25 7.5
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 7.5
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 9.9
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 31.1 bits (67), Expect = 0.11
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 8 VWHVFITRHTPRXWFCL-LIKILYPNISMSSLIIVLFV-FALAVYKLLRRKTVRWVKTNK 181
V HVF+T C+ + +L+ I ++ I+ F+ AL T+ W K NK
Sbjct: 397 VTHVFVTIFA----VCMGALAVLFNYIGITISWIITFIGIALGPAVFGITLTLFWKKMNK 452
Query: 182 YGGVETAILRTAPGPVCWPIIGSLH 256
YG + + + G VCW +GS +
Sbjct: 453 YGMIIGCPMGSITGVVCW--VGSCY 475
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 119 FALAVYKLLRRKTVRWVKTNKYGGVET 199
FALA Y L R T+R ++T++ G + T
Sbjct: 185 FALAFYNLPFRSTIRDLRTDRIGRLTT 211
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 455 NRNTSACAWSISRQR 499
N NT AC W+ISR R
Sbjct: 258 NDNTKACNWTISRLR 272
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 197 TAILRTAPGPVCWPIIGSLHLLGGHESPFQAFTELSKKYGD 319
T++ A G C + S LL H+SP F +SK GD
Sbjct: 244 TSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGD 284
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 393 QNGNVVAGXXTSXXXINPSPATGIPRPVHGPSHARELASACVQHHDLRXS 542
+N + A TS + P + PRP H P RE+++ + H + S
Sbjct: 410 KNSHSEASDGTSDVHLTPLFSNLSPRPSHVPLSPREISNDNLDDHLIELS 459
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 179 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 274
KY GV L G WP+ + L+GGHE
Sbjct: 41 KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 17 VFITRHTPRXWFCLLIKILYPNISMSSLIIVLFVF 121
VFIT T W L + Y N + I V+FVF
Sbjct: 251 VFITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVF 285
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 20 FITRHTPRXWFCLLIKILYPNISMSSLIIVLFVFALAVYKLLRRKTVRWVKTNKYG 187
F++R + L+ + N S+++L +L AL YKLL+ + R V KYG
Sbjct: 21 FVSRFNDKYELQPLLTLGLLNASLTALSDLL-AQALDSYKLLKFRNKRDVSLEKYG 75
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 47 WFCLLIKILYPNISMSSL 100
W C +K+LYP IS L
Sbjct: 37 WICKELKLLYPEISKHGL 54
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 236 PIIGSLHLLGGHESPFQAFTELSKKYGDIFS 328
P +GS G P+ F E KYGD+F+
Sbjct: 41 PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 245 GSLHLLGGHESPFQAFTELSKKYGDI 322
G L+ L H S F ++ KKYG+I
Sbjct: 179 GDLNDLSMHSSMFGFLAKIEKKYGNI 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,513
Number of Sequences: 5004
Number of extensions: 41490
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -