Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_L10
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 139 IAVGIAGTLFLGYCVYF 189
           IAVG +G +F GY + F
Sbjct: 235 IAVGASGNVFAGYLLVF 251


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 608 FYFHLFKYTIFYSTSSSCITLLLAFI 531
           FY  + + T+FY+ +    T+L++F+
Sbjct: 225 FYIIIRRKTLFYTVNLILPTVLISFL 250


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 190 DQQRRKDPLFKKKLRERRLN 249
           ++QR  D  F  K+R+ RLN
Sbjct: 477 EEQRNDDKPFLIKIRQYRLN 496


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 190 DQQRRKDPLFKKKLRERRLN 249
           ++QR  D  F  K+R+ RLN
Sbjct: 477 EEQRNDDKPFLIKIRQYRLN 496


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 LGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRER 240
           +G+A   A     GY    +QQ+++ PL +++ +++
Sbjct: 216 IGLAAYYAQVNLAGYIQEQNQQQQQQPLTQQQYQQQ 251


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 391  VEHLGQAVAVCGQTEQLLSVLQQTMPAPI 477
            +EH    + +C     L  VL+ + PAP+
Sbjct: 1088 LEHGAAGLRLCLHHRDLPCVLRASTPAPV 1116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,650
Number of Sequences: 438
Number of extensions: 3201
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)