Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_L04
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...   124   1e-29
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    79   4e-16
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   2.4  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   4.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   5.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   7.2  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.5  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score =  124 bits (298), Expect = 1e-29
 Identities = 75/176 (42%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
 Frame = +1

Query: 169 RRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSDEVKEHVIDYTYC 348
           +RP +S F QQ LPAWQ I T  TVLP  F++GI F P+G G+   S  VKE  IDYT C
Sbjct: 16  KRPDKSRFVQQTLPAWQFIFTPWTVLPLLFLLGIVFAPLGAGMFVASRRVKELRIDYTDC 75

Query: 349 MK--DDMN---VTCADFLKNNTEEIC--------TCHLPFNLTEDFKGEVYFYYGLTNYY 489
           M   D+      T  +F   N + +          C L F + E+    V+ +Y L N+Y
Sbjct: 76  MNIGDEFKQVPSTNIEFQYKNVKNVTAMWKSSGDVCTLRFQIPEEMTSPVFAFYRLKNFY 135

Query: 490 QNHRRYVKSRDDNQLLGRLSLTPSSDCDPFAR-AEENGVMKPIAPCGAIANSLFND 654
           QNHRRY  S D  QLLG            F +  E N   KP  PCG IANSLFND
Sbjct: 136 QNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFND 191


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
 Frame = +1

Query: 139 SDTSEQN--VKSRRPAESAFKQQRLPAWQPILTAGTVLPTFFVIGIAFIPVGIGLLYFSD 312
           SDT+      K+R P  ++F+QQR+ +WQP+LT   VLP FFV+GI F P+G GLLY S 
Sbjct: 10  SDTASNGPVAKTRAPPNTSFRQQRIKSWQPLLTPKIVLPLFFVLGIIFGPLGGGLLYASS 69

Query: 313 EVKEHVIDYTYC 348
            V+E V+DYT C
Sbjct: 70  IVQELVVDYTDC 81



 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
 Frame = +1

Query: 415 CHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLT----PSSDCDPFA 582
           C + F +    K  ++ YY LTN++QNHRRY KS D+ QL G ++LT       +C P  
Sbjct: 134 CIIRFTVPSVLKAPIFIYYRLTNFFQNHRRYAKSVDEKQLQG-VALTADEVKGGNCFPLE 192

Query: 583 RAEENGVMKPIAPCGAIANSLFND 654
             E++   KP  PCG IANSLFND
Sbjct: 193 VNEDD---KPYYPCGLIANSLFND 213


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 224 IGCHAGRRCCLKADSAGRLDFT 159
           IGCH  RRC    DSA  +D T
Sbjct: 6   IGCHTPRRCNRFIDSAALIDCT 27


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 451 GEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFAR 585
           G  +FY   T ++     Y  + DD+   G L + P SD D  +R
Sbjct: 28  GRYFFYENGTRFFLKGIAYQPNVDDSDTEGTLFVDPLSDGDACSR 72


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 517 WILHIVYDSGNN-WSVHNRNKLLL*SPQ*D*REDDKCIFLQC 395
           W L+I  +  NN +S    + +LL   Q D  +  KC+FL C
Sbjct: 21  WFLYISLELFNNMYSPFRSSSVLLSGAQSDIPKVGKCLFLPC 62


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = +1

Query: 403 EICTCHLPFNLTEDFKGEVYFYYGLTNYYQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFA 582
           E+ +  L FN       +   +  +T Y +  RR   +   +    RLSLTPSS   P  
Sbjct: 366 EVLSTFLSFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSS--TPST 423

Query: 583 RAEENGVMKPIAPCGAIANSL 645
            +    + +P  P    A SL
Sbjct: 424 PSPAESLPQPSNPTSVYAKSL 444


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +1

Query: 445 FKGEV--YFYYGLTNYYQNHRR 504
           F G +  Y +Y LT+Y+ +HRR
Sbjct: 272 FSGAILGYVFYDLTHYFLHHRR 293


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 487 YQNHRRYVKSRDDNQLLGRLSLTPSSDCDPFARAEENG 600
           YQ+ R++ KS+ D+ +LG   L+       FA + ENG
Sbjct: 60  YQSDRKFAKSKHDDIILGPPKLS-------FASSNENG 90


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 346 CMKDDMNVTCADFLKNNTEE-ICTCHLPFNLTEDFKGE 456
           C++  + ++C D+  N +++ IC  H   N +  F G+
Sbjct: 855 CLRLGIQISCKDYFSNKSDDKICEEHAVPNGSTKFTGK 892


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 321 FNLIRKIEQTYPDWYKSDSD 262
           FN ++ +++ YPDW  +  D
Sbjct: 634 FNALKNVDRIYPDWKVASID 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,768
Number of Sequences: 5004
Number of extensions: 50140
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)