Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_L04
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +1

Query: 277 IPVGIGLLYFSDEVKEHVIDYTYCMKDDMNVTCADFLKNN 396
           IP+ I ++Y+  ++  HV+++   +++       D L++N
Sbjct: 222 IPM-ILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSN 260


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 76   YLVIPKKRINTHNS*QTMATSSDTSEQNVKSRRPAESAFKQQRLPAWQPILTAGTV 243
            +L+ P+KR    +  +T  TS+ T+     + RP  +  K Q  P  +P  + G +
Sbjct: 1084 HLMRPRKRDQKQSDDKTKETSTVTAAAAATNIRPGTADNKPQLKPQ-KPFTSPGGI 1138


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 589 EENGVMKPIAPCGAIANS 642
           +ENGV K I  C AI+++
Sbjct: 93  DENGVNKLITECSAISDA 110


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 623  QGAIGFITPF 594
            QG +GF+TPF
Sbjct: 977  QGRVGFVTPF 986


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,267
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)