Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_L01
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    27   3.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   4.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.3  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   7.1  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   7.1  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.3  

>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 507 NISEVPERVDPQPPAAVLASSPFG 578
           N++ +P  V P PPA + ASS  G
Sbjct: 221 NLARIPSDVKPVPPAHLSASSTVG 244


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 646 ALTRQHHKPFRIPAAVLQWAARSPKGLEARTAA 548
           A T   H P + P+  +QW  +S + LEA   A
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKA 778


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 329  KTIGGSVIL*TGILEVERWLSSWSGFNTAEESNVSLRAFVS*KLSLYSN 183
            K +    +L   + + +RWL++WS F   ++   +L++ VS   SL S+
Sbjct: 1101 KRLINEYVLPLAVSQNDRWLTNWS-FTILKQEKKALQSLVSPIRSLVSD 1148


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 196 DSFQLTKARKETLDSSAVLKPLHDDNQRSTS 288
           D+FQ+ KA K++L+   V     ++NQR+ S
Sbjct: 121 DNFQIEKAFKQSLNIGKVDSADENNNQRTNS 151


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 366 SYNSLKTKFKSIQNYRGQCYSLNWNPRGRALVVVV 262
           S +S+ T   S + +R   YS+ W+P   +++ VV
Sbjct: 372 SSSSVATPVASFKWHRAPIYSIEWHPNEDSVIGVV 406


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 330 QNYRGQCYSLNWNPRG-RALVVVVEWFQ 250
           + Y+  CYSL ++P G  + ++V  W Q
Sbjct: 385 RRYKEFCYSLGYSPEGTNSSLIVYRWPQ 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,421
Number of Sequences: 5004
Number of extensions: 55865
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)