Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_L01
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 588 LRGHQKDLKLEPLPGVVGPRV-QELQKCFR 502
           L GHQ + +  P PG +  ++  + + CFR
Sbjct: 245 LAGHQGNFRAGPTPGTILKKLCPQEEACFR 274


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 588 LRGHQKDLKLEPLPGVVGPRV-QELQKCFR 502
           L GHQ + +  P PG +  ++  + + CFR
Sbjct: 160 LAGHQGNFRAGPTPGTILKKLCPQEEACFR 189


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 588 LRGHQKDLKLEPLPGVVGPRV-QELQKCFR 502
           L GHQ + +  P PG +  ++  + + CFR
Sbjct: 479 LAGHQGNFRAGPTPGTILKKLCPQEEACFR 508


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 369 YSYNSLKTKFKSIQNYRGQCYSLNW 295
           Y+YN+   K     NYR   Y++N+
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYYNINY 113


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/36 (19%), Positives = 19/36 (52%)
 Frame = +2

Query: 119 YVCRTLMCHLDAVRMKCHYRCNWNKEIVFNSQKLVK 226
           +VC+ +       R+K +  C+++++I+   +   K
Sbjct: 26  FVCKDITSTSALYRLKLYLFCDYDRDIIPEQKNATK 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,909
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)