Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_K23
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 44   LYTYPENFRAYKALIAAQYSGTDVKVA 124
            L+  PE+F A  ALI+ Q  G  + VA
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVA 1642


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 369 LTLGIMQFNKQNVERAKSEPTGPPLKVL 452
           +TLG+      + + AKS+ + PP+  L
Sbjct: 277 VTLGVTSLLTLSTQHAKSQASLPPVSYL 304


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 349 FLCLGLPLPWVSCNS 393
           F+ +   LPW SCN+
Sbjct: 89  FMSMRSELPWGSCNN 103


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 257 VANESLRGGDLATQARVWQWASWS 328
           V +E L   D +  A +W W S S
Sbjct: 397 VFDELLLDADWSVNAGMWMWLSCS 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,059
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)