Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_K07
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 144 1e-35
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 144 1e-35
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 9.4
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 9.4
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 144 bits (349), Expect = 1e-35
Identities = 69/141 (48%), Positives = 88/141 (62%)
Frame = +2
Query: 176 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 355
Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AA
Sbjct: 39 QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98
Query: 356 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLPRTTTGAR 535
Y+TG E +++GP F+ +LDVGL RT+TG+R
Sbjct: 99 YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158
Query: 536 VFGAMXGAVDGGLNVPHSIKR 598
VFGAM GA DGGL +PHS R
Sbjct: 159 VFGAMKGASDGGLFIPHSPNR 179
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1
Query: 61 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 189
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL + +
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 144 bits (349), Expect = 1e-35
Identities = 69/141 (48%), Positives = 88/141 (62%)
Frame = +2
Query: 176 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 355
Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AA
Sbjct: 39 QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98
Query: 356 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFRCYLDVGLPRTTTGAR 535
Y+TG E +++GP F+ +LDVGL RT+TG+R
Sbjct: 99 YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158
Query: 536 VFGAMXGAVDGGLNVPHSIKR 598
VFGAM GA DGGL +PHS R
Sbjct: 159 VFGAMKGASDGGLFIPHSPNR 179
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1
Query: 61 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 189
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL + +
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 392 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 300
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 2 PFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASXVQ 178
PF+ +G S LR +IW SL+ T G SR + KL+ + N VQ
Sbjct: 985 PFYCIGFKSAMPEYTLRTRIWASLRSQTLYRTISGFMNYSRAI---KLLYRVENPEIVQ 1040
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.1
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = +2
Query: 2 PFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGVVKGKLIIMLVNASXVQ- 178
PF+ +G + LR +IW SL+ T G SR + KL+ + N Q
Sbjct: 961 PFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAI---KLLYRVENPDVAQL 1017
Query: 179 DKNKYNTPKYRLIVRLSNKDVTC--QVAYSRIEGDHI 283
+ + + +Y L S K C Y++ D I
Sbjct: 1018 FEGQMDVLEYELDRMASRKFKMCVSMQRYAKFTADEI 1054
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 2 PFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 130
PF+ +G S LR +IW SL+ T G SR +
Sbjct: 803 PFYCVGFKSATPEYTLRTRIWASLRTQTLYRTINGFSNYSRAI 845
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +2
Query: 230 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 352
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,393
Number of Sequences: 5004
Number of extensions: 50170
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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