Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_J24
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   158   3e-40
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   158   3e-40
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    27   1.9  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.9  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   7.8  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  158 bits (384), Expect = 3e-40
 Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
 Frame = +2

Query: 26  LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 205
           +++++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 206 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR-ERG 382
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR   G
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEG 117

Query: 383 D 385
           D
Sbjct: 118 D 118



 Score = 33.9 bits (74), Expect = 0.013
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +3

Query: 387 GDIVTIGECRPLSKT 431
           GD+VT+G+CRPLSKT
Sbjct: 117 GDVVTVGQCRPLSKT 131


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  158 bits (384), Expect = 3e-40
 Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
 Frame = +2

Query: 26  LSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 205
           +++++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 206 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR-ERG 382
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR   G
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEG 117

Query: 383 D 385
           D
Sbjct: 118 D 118



 Score = 33.9 bits (74), Expect = 0.013
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +3

Query: 387 GDIVTIGECRPLSKT 431
           GD+VT+G+CRPLSKT
Sbjct: 117 GDVVTVGQCRPLSKT 131


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 375 NVEIGDIVTIGECRPLSKT 431
           N  +GD VTI  CRP S T
Sbjct: 48  NCNVGDAVTIQPCRPRSAT 66


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 179 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 81
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 62  FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 238
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 239 TGV 247
           TGV
Sbjct: 222 TGV 224


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 5   PYTNFFSLSSKMADQT-EKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG 178
           P T  ++   K  +++ + +F K       R G     D++  +N+G+ F+TP +   G
Sbjct: 164 PLTGMWNSFLKDVNRSIDLSFIKYVGDAAGRPGDHNSTDLKFAENIGIKFETPEQFFLG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,354
Number of Sequences: 5004
Number of extensions: 41798
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)