Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_J24
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 157 4e-39
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 28 3.0
AF098985-3|AAC67421.1| 358|Caenorhabditis elegans Hypothetical ... 28 3.0
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical pr... 27 6.9
U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein. 27 6.9
Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical pr... 27 9.1
U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeo... 27 9.1
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 157 bits (381), Expect = 4e-39
Identities = 73/116 (62%), Positives = 89/116 (76%), Gaps = 3/116 (2%)
Frame = +2
Query: 38 MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 208
M++QTE+AF KQ TV LN K + +K R+ + VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60
Query: 209 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRE 376
GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FR+
Sbjct: 61 GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRD 116
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 348 PYICRLASGNVEIGDIVTIGECRPLSKT 431
P C A ++ GD+VTIGECRPLSKT
Sbjct: 107 PAHCSPAFRDIHPGDLVTIGECRPLSKT 134
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 110 SSCHLSCSGKRWPVSETLSLSD 45
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 110 SSCHLSCSGKRWPVSETLSLSD 45
+SC++ CSG++W E S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032
>AF098985-3|AAC67421.1| 358|Caenorhabditis elegans Hypothetical
protein C08G5.3 protein.
Length = 358
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 317 NRFEKRHRNMSVHLSPCFRERGDW*YCNDRRMQTFVQNRFKNS 445
N EK ++ + HL+ FR G Y ND+ ++FV ++F S
Sbjct: 219 NEDEKNSKSETQHLTGYFRTIGSMKYVNDKE-KSFVLSKFHES 260
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 122 ACPSSSCHLSCSGKRWPVSETLSLSDPP 39
AC S LS WP S TL L+ PP
Sbjct: 92 ACKDGSNELSAGDYVWPFSYTLPLNVPP 119
>Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical
protein C27C12.4 protein.
Length = 450
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 250 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 369
S++ED E+ DP LP + + E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238
>Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical
protein ZC168.4 protein.
Length = 361
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 146 LNQHSYGDACPSSSCHLSCSGKRWPVSETLSLSDPPFCLTMKRSWC 9
LN ++ +CPSS L C + ++ + + FC T S C
Sbjct: 198 LNSLNFDLSCPSSLVFLRCLSRILSENDASPIDNQAFCYTYNISKC 243
>U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein.
Length = 361
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 146 LNQHSYGDACPSSSCHLSCSGKRWPVSETLSLSDPPFCLTMKRSWC 9
LN ++ +CPSS L C + ++ + + FC T S C
Sbjct: 198 LNSLNFDLSCPSSLVFLRCLSRILSENDASPIDNQAFCYTYNISKC 243
>Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical
protein K01B6.3 protein.
Length = 410
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 13 QLLFIVKQNGGSDRESVSETGHRFPEQERWHEEE 114
+LLF K+NG SV E F E + H EE
Sbjct: 372 RLLFSPKKNGRIPNVSVEEVDMEFDEDDDSHPEE 405
>U28993-7|AAL27244.1| 641|Caenorhabditis elegans C.elegans homeobox
protein 38,isoform b protein.
Length = 641
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 457 KKPFGILKPVLDKGLHSPIVTISPISTFPEA 365
KKP G+L L + +P ++ S I T P A
Sbjct: 259 KKPLGLLNQALSSVISTPTISSSNIPTPPSA 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,666,034
Number of Sequences: 27780
Number of extensions: 245266
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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