Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_J24
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.24 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   1.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 314 YNRFEKRHRNMSVHLSPCFRERGDW*YCNDRRMQTFVQNRFKNS 445
           YNR+  R R + +  + C  ER    +  +RRM+   +N+ K +
Sbjct: 291 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKGT 334


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 314 YNRFEKRHRNMSVHLSPCFRERGDW*YCNDRRMQTFVQN 430
           YNR+  R R + +  + C  ER    +  +RRM+   +N
Sbjct: 29  YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 67


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 254 KMKMQRTIVIRRDYLHYLPKY--NRFEKRHRNMSVHLSPCFRERGDW*YCNDRRMQ 415
           ++K QRT   R   L    ++  NR+  R R + +  + C  ER    +  +RRM+
Sbjct: 7   EVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 62


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 79  RFPEQERWHEEEGHAS 126
           R P +  WH  E H S
Sbjct: 149 RTPTEASWHSPEAHIS 164


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 314 YNRFEKRHRNMSVHLSPCFRERGDW*YCNDRRMQ 415
           YN +  R R + +  + C  ER    +  +RRM+
Sbjct: 29  YNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,240
Number of Sequences: 438
Number of extensions: 3034
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)