Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_J15
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     29   0.40 
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   3.7  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   3.7  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   4.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   8.6  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 132 YYLKYVIIICNIWSLVNTMYLNVTKELSHIGEFSDPPLEELLN 260
           Y   Y III +  + +N +Y N++K +     F+  PLEE LN
Sbjct: 41  YISFYFIIISSFSTHLNILYFNLSKSMV---SFAQVPLEEYLN 80


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 23   RPHGRSGYEAEAAICASTMHNLIAAVQHRVPQIHKTILFEIRNN 154
            R  G+ G   E     +++  LIA V+   P++H+ +   +R N
Sbjct: 1150 RARGKKGTVFEEEYLVNSLRRLIARVEEIRPEVHRLLEALVRCN 1193


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 48  RLKLLFVPQLCIISSLLF-NTEYHRYTK-PYYL 140
           R++ ++VP+ C++ SL +  T + +++K  YYL
Sbjct: 38  RVRYIYVPRHCLLRSLTYATTNFTKFSKFVYYL 70


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 PPLEELLNWIMRETSPSAAFAGSMPLLATV 326
           P  +E  +WI+++ SP+ +   S P+L+ +
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQI 168


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 220 MCDNSFVTFKYIVFTKDHILHMIITYFK 137
           +C  SFVTF Y   T+D+  H+ I + K
Sbjct: 10  ICLYSFVTFAYPKVTQDYRNHLPIKFAK 37


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/66 (19%), Positives = 31/66 (46%)
 Frame = +3

Query: 96  LFNTEYHRYTKPYYLKYVIIICNIWSLVNTMYLNVTKELSHIGEFSDPPLEELLNWIMRE 275
           +F+   +R+ +         IC++  + NT++   T  + ++ + S+ P   L +W   +
Sbjct: 668 IFSKTQYRFLELITSSSFYRICSLVGVGNTLWAAYTTGMIYVFDVSESPWRLLKSWHGHK 727

Query: 276 TSPSAA 293
            S + A
Sbjct: 728 ASHNGA 733


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 345 PVVAHPHYEHYEARERAYSVYKMYGRFSAEEIYEELNKLKV 467
           P   H  Y      +  YSV K+YG    E    E+N  ++
Sbjct: 354 PTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRL 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,020
Number of Sequences: 5004
Number of extensions: 38188
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)