Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_J15
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754...    31   0.70 
02_05_0284 - 27496533-27496898                                         30   0.93 
04_04_0505 + 25719959-25720052,25721548-25722266                       27   6.5  

>07_03_0589 +
           19773904-19774032,19774224-19774298,19774947-19775444,
           19775898-19776263,19776636-19776727,19776826-19776872,
           19776953-19777014,19778461-19778498,19779354-19779366
          Length = 439

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 348 VVAHPHYEHYEARERAYSVYKMYGRFSAEEIYEELNKLKVTYVVVETKYC 497
           + AH    H E  E   ++ K YG    EE+ + +N       + ETK C
Sbjct: 351 IQAHSEAPHVEVLEHVSTILKEYGFCPTEEVMDTINLQPYDCKMSETKSC 400


>02_05_0284 - 27496533-27496898
          Length = 121

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 LLNWIMRETSPSAAFAGSMPLLATVLLSTRRP 347
           L +W+ R  + SA + G +P L   +LST  P
Sbjct: 38  LRDWLARNPAVSACWGGDLPFLTMAMLSTSMP 69


>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 242 LRGVAELDNERDIAERGFRGLDAAAS 319
           LRG+       DI  RGF GLD AA+
Sbjct: 112 LRGLHPSSETGDIRRRGFSGLDGAAA 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,148
Number of Sequences: 37544
Number of extensions: 241342
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)