Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_J07
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 133 1e-31
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 120 9e-28
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 61 6e-10
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 60 1e-09
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 49 3e-06
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 29 2.1
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 29 2.7
11_04_0320 + 16354122-16354226,16354652-16356859 28 6.3
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 27 8.3
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 133 bits (321), Expect = 1e-31
Identities = 62/136 (45%), Positives = 85/136 (62%)
Frame = +1
Query: 133 YADNGGSXXXXXXXXXXXXXXXTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 312
Y +NGG+ TRLS G++I TRD K+ +L++ L ++G D L
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 313 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 492
+ L AR +Y+H+HNK M+ PA+AQ+LS LYYKRFFPYY NVL GLDS+GKGCV++Y
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 493 DPIGHCARHNFRAGGS 540
D +G R + A G+
Sbjct: 129 DAVGSYERTGYSAQGT 144
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 120 bits (289), Expect = 9e-28
Identities = 67/161 (41%), Positives = 87/161 (54%), Gaps = 21/161 (13%)
Frame = +1
Query: 121 RFEPYADNGGSXXXXXXXXXXXXXXXTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCD 300
RFE Y +NGG+ TRLS G+SI +RD K+ L++ VL ++G D
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGD 62
Query: 301 TLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD---- 468
L R L A+ +YEH HNK M+ PA+AQ+LS LYYKRFFPYY NVL GLDS+
Sbjct: 63 VKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEVAAH 122
Query: 469 -----------------GKGCVYSYDPIGHCARHNFRAGGS 540
GKGCV++YD +G R + A G+
Sbjct: 123 QYERMITTCENIFSSFAGKGCVFTYDAVGSYERTGYSAQGT 163
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/101 (30%), Positives = 51/101 (50%)
Frame = +1
Query: 202 RLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPA 381
RL D +++FK+ + +G +G D TL + L R ++Y+ + M
Sbjct: 140 RLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQT 199
Query: 382 VAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 504
A ++S +LY KRF PY+ V+AGL D + + + D IG
Sbjct: 200 FASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIG 240
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/101 (30%), Positives = 52/101 (51%)
Frame = +1
Query: 202 RLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPA 381
RL D +++FK+ + +G +G D TL + L R ++Y+ + M A
Sbjct: 36 RLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQA 95
Query: 382 VAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 504
A ++S +LY KRF PY+ V+AGL + + + + D IG
Sbjct: 96 FASLVSALLYEKRFGPYFCQPVIAGLGDNDEPFICTMDCIG 136
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 223 IYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLST 402
++ D+ K+ L ++GA+G D + T +Q + +Y+ +N ++T A A
Sbjct: 27 VHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRG 86
Query: 403 MLYYK-RFFPYYVSNVLAGLDSDGKGCVYSYDPI 501
L R PYYV+ +LAG DSD +Y D I
Sbjct: 87 ELATALRKNPYYVNVLLAGYDSDVGASLYYIDYI 120
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 522 LPRWWFRCCTAATAPRXSNWL 584
LPRWW CC T R ++++
Sbjct: 397 LPRWWCCCCFTVTGSRFTDYI 417
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 233 ETKKSCSNYLRVQYWERLAAGVTH*P*RVF 322
+T + C+N L+ Y ERLA G+ P +VF
Sbjct: 130 KTARECANILQNHYPERLAIGILFNPPKVF 159
>11_04_0320 + 16354122-16354226,16354652-16356859
Length = 770
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 476 DVYIVTTLSDTVRAITSALVVPLLHSCNRSSTIKLA 583
DV T+ +A+ SA+ VPLLH C + ++ A
Sbjct: 62 DVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAA 97
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 343 YEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 495
Y+ H K+ + ++ T YYKR + S + G + G C Y ++
Sbjct: 132 YDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYRHE 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,001
Number of Sequences: 37544
Number of extensions: 299932
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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