Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_J06
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.58 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 440 LYMLGFTAMHQCPLEFNSHPH 502
           LYM   T +  C ++F S+PH
Sbjct: 121 LYMSKLTLVLSCAMKFESYPH 141


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 287 HRSQMHR--CFLRHHHFQQANLLGLHRYHSL 201
           H+ Q+ R   FLR    Q  N  GLH  H L
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGL 140


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 110 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENG 211
           +P    ++ P  S     PAK   AA    K NG
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +2

Query: 185 AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 289
           A +N   N  +    +   +NG+   +++ + NGD
Sbjct: 237 ASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 188 ESNGKENGTDEAPEDSPAENGDAEESNDASENGD-ATEKKETG 313
           +++ K+NG  +          +  + ND  +NG+   + K  G
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNG 517


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 440 LYMLGFTAMHQCPLEFNSHPH 502
           LYM+  T    C + F  +PH
Sbjct: 152 LYMVKLTLKLSCAMNFLIYPH 172


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 208 ILFAITFCSFNFLSWRLL 155
           I+F + F  FN L W  +
Sbjct: 450 IVFPVAFIIFNILYWSFI 467


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 74  TMADAAVDKKEVAPEEVTSTEPKESPV 154
           T     V    +A  E  S EPK SP+
Sbjct: 183 TSGPGVVSNPMIAELETLSVEPKVSPM 209


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 543 GYQYGCNTFVGSG 505
           G+   C TF+GSG
Sbjct: 64  GFPIKCGTFLGSG 76


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 74  TMADAAVDKKEVAPEEVTSTEPKESPV 154
           T     V    +A  E  S EPK SP+
Sbjct: 183 TSGPGVVSNPMIAELETLSVEPKVSPM 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,075
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)