Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_J04
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom... 112 4e-26
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 1.8
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 3.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 7.2
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.2
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 7.2
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.2
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 9.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.5
>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 163
Score = 112 bits (270), Expect = 4e-26
Identities = 54/121 (44%), Positives = 77/121 (63%)
Frame = +3
Query: 291 KMSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPV 470
K+ S P EG+VV GFGRGSKELG PTAN + ++ L + + GVY+G+A V V
Sbjct: 17 KVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-V 75
Query: 471 YKMVANIGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQ 650
+ MV ++GW P+Y+NK S E H++ DFY +++ ++GY+R E N+ LD LIE
Sbjct: 76 FPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIED 135
Query: 651 I 653
I
Sbjct: 136 I 136
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -2
Query: 594 LEQFLN*NHRNHPENCALYGFQQTSLYFGKKDTILYLLPSYIQVLCQLEPIHNKHLAPNL 415
L+ + N HR CAL F++T + G+ D +L + P +I+ Q+ L +
Sbjct: 631 LKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCP-HIEHGFQIMSKSLSSLVGEI 689
Query: 414 LVKILQLPKD 385
L I + KD
Sbjct: 690 LTNINRYLKD 699
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 426 PGVYYGWAQVDTGPVYKMVANIGWCPFYQNKEMSVETHIMHN 551
PGV+ G + TG + K ++ CP +++ I+ N
Sbjct: 80 PGVFEGIVNLTTGKIEKWEHSVDTCPIITADLLAITDEIVRN 121
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 531 ETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQI 653
ETHI H + + G KI ++ Y G N +E +
Sbjct: 1081 ETHIQHFIKKFYAGDEKKIPIVEYFGGVPPVNVSHKSLESV 1121
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -3
Query: 488 ICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRIISCWAS 366
+C+ L+YR+ + ++ +L + + F R+ SC++S
Sbjct: 59 LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSS 99
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 537 HIMHNFQGDFYGSNLKIALIGYLRGEKNF 623
H+M +GD+ L++A G+L G+ +F
Sbjct: 277 HLMIPTKGDYVRQTLELAGFGFLPGDASF 305
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 234 IRLLLSKKKNRMKIFFQLRKMSSVLPFFLE 323
IRLL +K NR+ + + +SV+ F+ E
Sbjct: 118 IRLLKTKDPNRIMALLKFKDQASVIRFYTE 147
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 263 SHENIFSIEENVISSAFFP*RRGS 334
SH+N +S+ E +S FF RG+
Sbjct: 150 SHQNSYSLNETYLSYDFFDNHRGA 173
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 418 PFGKDFTTSKG*LAVGHPSSLEPLPKPLTTSPSRKK 311
P+G + S V S EP+ PLT+ P+ KK
Sbjct: 639 PYGNNPLFSSTTSQVAPTSIQEPIASPLTSKPTPKK 674
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,343
Number of Sequences: 5004
Number of extensions: 59121
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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