Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_I24
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 216 2e-57
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 216 2e-57
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 153 2e-38
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 91 2e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 77 2e-15
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 76 5e-15
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 75 1e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 41 1e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.020
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.020
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.020
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 31 0.19
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.33
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.3
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 2.3
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 27 2.3
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 5.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.2
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.2
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 9.5
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 9.5
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 9.5
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 9.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 216 bits (528), Expect = 2e-57
Identities = 110/172 (63%), Positives = 133/172 (77%), Gaps = 1/172 (0%)
Frame = +2
Query: 77 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 256
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 257 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEV 433
DEQ+R +TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEV
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEV 115
Query: 434 TAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRALLEL 589
TAALRVTDGAL QTETVLRQA+ ERI+P++ +NK+DRALLEL
Sbjct: 116 TAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLEL 167
Score = 32.7 bits (71), Expect = 0.047
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 582 LSSQLEAEELYQTFQRIVENVNV 650
L Q+ EELYQ F R+VE+VNV
Sbjct: 165 LELQISQEELYQNFARVVESVNV 187
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 216 bits (528), Expect = 2e-57
Identities = 110/172 (63%), Positives = 133/172 (77%), Gaps = 1/172 (0%)
Frame = +2
Query: 77 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 256
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 257 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEV 433
DEQ+R +TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEV
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEV 115
Query: 434 TAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRALLEL 589
TAALRVTDGAL QTETVLRQA+ ERI+P++ +NK+DRALLEL
Sbjct: 116 TAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLEL 167
Score = 32.7 bits (71), Expect = 0.047
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 582 LSSQLEAEELYQTFQRIVENVNV 650
L Q+ EELYQ F R+VE+VNV
Sbjct: 165 LELQISQEELYQNFARVVESVNV 187
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 153 bits (371), Expect = 2e-38
Identities = 83/165 (50%), Positives = 112/165 (67%)
Frame = +2
Query: 95 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 274
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 275 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 454
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+
Sbjct: 67 GITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
Query: 455 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRALLEL 589
DGA QT TVLRQA +RIK IL +NKMDR + EL
Sbjct: 119 DGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITEL 163
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 90.6 bits (215), Expect = 2e-19
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Frame = +2
Query: 83 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF-- 244
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I G+
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGA 100
Query: 245 -TDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 421
D + E+++ ITI+S A +E + N Q+ EK + IN+ID+PGH+DF
Sbjct: 101 KMDFMELEREKGITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDF 158
Query: 422 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
+ EV ALRV DGA+ QT TV RQ + I F+NKMDR
Sbjct: 159 TIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 77.4 bits (182), Expect = 2e-15
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Frame = +2
Query: 128 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT--DTRKDEQDRCITIKSTAI 301
+IRN+ +IAH+D GK+TLT+ ++ G + +T T D E+ R ITI S AI
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 302 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 481
S + +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 87 SFTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 482 XXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
QT+ V +QA I ++F+NKMDR
Sbjct: 127 SAGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 75.8 bits (178), Expect = 5e-15
Identities = 49/157 (31%), Positives = 79/157 (50%)
Frame = +2
Query: 101 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 280
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 281 TIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 460
T+K+ SM + + +L+NLID+PGHVDF +EV +L +G
Sbjct: 107 TVKAQTCSMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEG 150
Query: 461 ALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 571
+ QT + A ++ + I +NK+D
Sbjct: 151 CILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVD 187
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 74.5 bits (175), Expect = 1e-14
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Frame = +2
Query: 107 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 283
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 284 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 463
IKST +++ D + K+ F ID+PGHVDF EV A + ++DG
Sbjct: 192 IKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGV 236
Query: 464 LXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRALLEL 589
+ T +++ AI + +L +NK+DR +LEL
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILEL 278
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 41.1 bits (92), Expect = 1e-04
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 1/152 (0%)
Frame = +2
Query: 119 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 298
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAH 108
Query: 299 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 478
+ +E + +D PGH D+ + DGA+
Sbjct: 109 VE--YETANRHYAH------------------VDCPGHADYIKNMITGAATMDGAIIVVS 148
Query: 479 XXXXXXXQTETVLRQAIAERIKPI-LFMNKMD 571
QT L A +K I +++NK+D
Sbjct: 149 ATDGQMPQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.19
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 92 VDEIRGMMDKKR-NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 268
+DE M D+ R I + K+ +T L S+ ++A A R+ D + +
Sbjct: 435 IDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGE 494
Query: 269 DRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 439
+ I +ST +S F D++FI + E ++ ++I+ ++ SSE A
Sbjct: 495 N--IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.33
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 140 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 307
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 308 FFELEEK 328
FE K
Sbjct: 232 AFEAMRK 238
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.0
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 316
N+ I HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 317 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 466
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -2
Query: 513 TVSVCTHTPD-TQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 337
T + C+ P+ T ST + +V+ S + ++ ST P ++ + S S V +
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-----SSSVHS 629
Query: 336 TKSFSSSSKNIEMAV 292
+ + SSSS++ M++
Sbjct: 630 SSAHSSSSRSSSMSL 644
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 340
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 339 NTKSFSSSSKNIEMAV 292
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -2
Query: 519 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 340
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 339 NTKSFSSSSKN 307
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 426 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS-SSKNIEMAVDLMVMQRSCSSLRV 250
EE + P + K KK S F+ T +S S++NI+ A+DL+ + S S ++
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKI 125
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 474 LTVCLVCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSQLEAEEL 611
L V + YKL+ RL +A S+ C WT LF S + E L
Sbjct: 348 LNVIGIAAYKLEDPVHRLFVTAFSVCCECLAWTSLF--SNISPENL 391
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 378 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 271
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 337
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 336 TKSFSSSSKN 307
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 133 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 38
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 128 SASCPSSHGSRLP*NSPF*MVYDFCSIK 45
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 162 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 269
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSL 193
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -2
Query: 639 FLQYAGTSGIVLQLQVGSSRRARSILFMNRIGLMRSAIA*RSTVSVCTHTPDTQSTTTRA 460
FL+Y SGI L + S+ A L++ R ++ +A + + VS T P T A
Sbjct: 2 FLKYILASGICLVSLLSSTNAAPRHLYVKRYPVIYNA-SNITEVSNSTTVPPPPFVNTTA 60
Query: 459 PSVT 448
P+ T
Sbjct: 61 PNGT 64
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 56 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 214
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -1
Query: 592 WELKKSTVHFVHEQNRLDALGNSLTQYCFSLYTHTRHTVNNHKGSISDTEC 440
WE +S ++ + LD LT+YC + + NH GS C
Sbjct: 336 WEEFRSYYEYMGRPSALD-YAKRLTEYCGGAHIWLKREDLNHGGSHKINNC 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,757
Number of Sequences: 5004
Number of extensions: 52782
Number of successful extensions: 204
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -