Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_I19
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 69 3e-12
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 60 2e-09
03_02_0673 - 10328994-10329281 43 2e-04
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 33 0.12
05_01_0258 + 1984666-1984878,1985019-1985852 31 0.47
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425... 29 1.9
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 29 3.3
06_02_0089 + 11595704-11596027 28 4.4
08_02_0360 + 16196712-16197560,16198126-16198875 27 7.6
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 68.9 bits (161), Expect = 3e-12
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +2
Query: 113 LRLVCFLMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVK 289
L L L+L V KK KV +A+YYESLCP S F+ LA V+RD V +
Sbjct: 11 LLLAAILLLAAGAVEGKK--GGKVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLS 68
Query: 290 MVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVL 400
+VPYG + DGK S HG++EC+ N V+AC +
Sbjct: 69 LVPYGNAR--VKDGKISCQVEHGSEECFLNTVEACAI 103
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 188 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKMVPYGKSTHDKVDGKWSFICHHGAD 364
++VYYE+LCP F+ LA ++RD +V +++VP+G + +V S C HG +
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57
Query: 365 ECYGNKVQACVLK 403
EC N ++ACV++
Sbjct: 58 ECQLNAIEACVIR 70
>03_02_0673 - 10328994-10329281
Length = 95
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 KVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKMVPYGKS 310
KV +A+YYE+LCP +FI LA ++ D V +++VPYG +
Sbjct: 38 KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNA 82
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Frame = +2
Query: 197 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKMVPYGKSTHDKVDGKWSFIC- 349
+YE CP ++ + + P W R +V +P+ H+K D W
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175
Query: 350 -----HHGADECYGNKVQACVLKDRNLXDTEXMEIVI 445
HHGAD+ N KD N+ + + V+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 113 LRLVCFLMLLCYVVAKKKT-EDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 274
++LVCF++++ A D ++K+ YYE C D +K + + + +D RG
Sbjct: 2 VKLVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55
>05_04_0288 +
19839597-19839821,19841882-19842107,19842494-19842582,
19845184-19845387,19845463-19845717,19845796-19846011,
19846611-19846766,19846880-19847039,19847702-19847788,
19847789-19847940,19848006-19848143,19848714-19848788,
19849166-19849444
Length = 753
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 176 GLRFSSSPRHSRAASESKPAGESSSCCFISGKKT 75
G F + P +R S KP G+SS+ ISG T
Sbjct: 675 GATFGTKPSPARPPSARKPLGQSSNANIISGTPT 708
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 203 RNRPLF*PYGLRFSSSPRHSRAASESKPAGESSSCCFIS 87
R+ PL+ P R S+S RHS A + PA S +IS
Sbjct: 29 RSAPLYRPLDSRSSTSRRHSDANRGNSPAAPHSLDIYIS 67
>06_02_0089 + 11595704-11596027
Length = 107
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +1
Query: 94 KQQDEDSPAGLLSDAALLCRGEEENRRP*GQNSGLLRIPLS*QQEVYNDATGSRLEGLQR 273
KQQ + G G+ RR G ++ R+P QQ+ G+ G +R
Sbjct: 7 KQQQQQQQGGRRQHPGATRDGDRRQRR--GSSA---RMPRKQQQQQQGWGRGAAGSGTER 61
Query: 274 TCQSQNGPVWEEHARQGGW 330
+ Q+ G EE R+G W
Sbjct: 62 SAQAARG-AREEEERKGRW 79
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 275 VL*SPSRREPVASL*TSCCQDKGIRNRPLF*PYGLRFSSSPRH 147
VL SP EP+ L S + G+R P P + S SPRH
Sbjct: 288 VLGSPENLEPIGELPGSAKPEPGVRPNPSR-PRSVARSLSPRH 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,704
Number of Sequences: 37544
Number of extensions: 309946
Number of successful extensions: 879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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