Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_I18
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.77 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   2.3  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.1  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   7.2  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   9.5  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 371 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNI 484
           EE++  Q+  +KLR     E  D +L +  FG TE N+
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNL 100


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 419 KLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKKST 526
           +L E  D  L  ETFGV+ G+IG+  +F  TT +++
Sbjct: 39  QLNEAGD-ELNDETFGVSAGSIGRDFDFSGTTAQAS 73


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 356 TEKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNF 502
           T +T     P   LA+  +QQ    ++DLR+ ++   +T G +  +D F
Sbjct: 224 TSETVYAHEPSDSLAKASKQQIPTVQNDLRILIK-LDITIGRLNLIDQF 271


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 371 EEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKKST 526
           E   P+    EK   + + + S      +    T+  + ++ N HP T KST
Sbjct: 257 ENRYPKLTKVEKQMTKSVSKTSQTDKDEDNLDFTKNLLTRIKNLHPLTNKST 308


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 536 ANSVYSSL*LGGNCQVYQCYLLLHQRFPWLVANLILPVASAGEVSQPTSALES 378
           A   +++L LG N +VY   L     + W+ A  I  + SA E+   T  +++
Sbjct: 73  AGGYFANLTLGSNERVYSLTLDTGSPYTWVTAKNITAL-SASEIWSDTDGVDA 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,177
Number of Sequences: 5004
Number of extensions: 37790
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)