Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_I18
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...    28   6.6  
AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 508 NYKEEYTEFADLLTKKITFYKAKDEFPGFIDDL 606
           N K  Y+   + + K +TF KAK+E  GF+  L
Sbjct: 351 NKKSNYSTSREDIQKIVTFLKAKEENFGFLSSL 383


>AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical
           protein W07B8.3 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 508 NYKEEYTEFADLLTKKITFYKAKDEFPG---FIDDLXKNILVQMSSXDIR 648
           +Y+ EY +  D L KK+  ++ + +F G   FID   + ++V  S  D+R
Sbjct: 23  DYEMEYADLYDALLKKV--HEVRADFEGDLAFIDQYGRQVIVS-SDKDVR 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,953,838
Number of Sequences: 27780
Number of extensions: 210085
Number of successful extensions: 699
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)