Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_I13
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 196 7e-51
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 196 7e-51
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 196 7e-51
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 194 3e-50
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 176 5e-45
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 173 3e-44
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 173 3e-44
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 173 6e-44
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 172 8e-44
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 172 8e-44
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 169 7e-43
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 169 7e-43
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 159 6e-40
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 158 2e-39
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 136 8e-33
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 116 9e-27
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 96 8e-21
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 96 8e-21
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 96 8e-21
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 95 2e-20
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 95 2e-20
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 90 7e-19
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 83 6e-17
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 83 6e-17
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 57 5e-09
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 57 5e-09
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 32 0.19
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 1.4
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 1.4
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 1.4
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 27 5.5
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 27 5.5
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 27 5.5
Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical pr... 27 7.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 7.3
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 196 bits (477), Expect = 7e-51
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITG +NYA
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYA 104
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 196 bits (477), Expect = 7e-51
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITG +NYA
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYA 104
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 196 bits (477), Expect = 7e-51
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITG +NYA
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYA 104
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 194 bits (472), Expect = 3e-50
Identities = 83/103 (80%), Positives = 94/103 (91%)
Frame = +2
Query: 113 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 292
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+H
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 293 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
VPRAV VDLEPTV+DE+RTGTYR LFHPEQLITG +NYA
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYA 103
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 176 bits (429), Expect = 5e-45
Identities = 77/104 (74%), Positives = 88/104 (84%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
HVPRA+FVDLEPTV+DEVRTGTY +LFHPEQLI+G +NYA
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYA 104
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 173 bits (422), Expect = 3e-44
Identities = 77/104 (74%), Positives = 90/104 (86%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITG +NYA
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYA 102
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 173 bits (422), Expect = 3e-44
Identities = 77/104 (74%), Positives = 90/104 (86%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITG +NYA
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYA 102
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 173 bits (420), Expect = 6e-44
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = +2
Query: 107 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAG 286
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 287 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
KHVPRA+ VDLEPT +DE+RTGTY+ LFHPEQL+TG +NYA
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYA 109
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 172 bits (419), Expect = 8e-44
Identities = 76/104 (73%), Positives = 90/104 (86%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITG +NYA
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYA 102
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 172 bits (419), Expect = 8e-44
Identities = 76/104 (73%), Positives = 90/104 (86%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITG +NYA
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYA 102
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 169 bits (411), Expect = 7e-43
Identities = 75/104 (72%), Positives = 89/104 (85%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITG +NYA
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYA 102
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 169 bits (411), Expect = 7e-43
Identities = 75/104 (72%), Positives = 89/104 (85%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITG +NYA
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYA 102
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 159 bits (387), Expect = 6e-40
Identities = 72/103 (69%), Positives = 81/103 (78%)
Frame = +2
Query: 113 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 292
RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET GKH
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 293 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
VPR +FVDLEPTVVDEVRTGTYR LFHPEQL++G + YA
Sbjct: 68 VPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYA 110
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 158 bits (383), Expect = 2e-39
Identities = 71/104 (68%), Positives = 82/104 (78%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG T G S TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG---TSMEPDGNSGSLGTFFSDTGYGR 57
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
HVPR++FVDLEPTVVDE+RTG Y++LFHPEQ++TG +NYA
Sbjct: 58 HVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYA 101
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 136 bits (328), Expect = 8e-33
Identities = 58/103 (56%), Positives = 74/103 (71%)
Frame = +2
Query: 113 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 292
REC+S+H+GQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ GKH
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKH 64
Query: 293 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
VPRA++VDLEPTV+DE+R G Y LFHP+Q+I G +NYA
Sbjct: 65 VPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYA 107
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 116 bits (278), Expect = 9e-27
Identities = 52/82 (63%), Positives = 61/82 (74%)
Frame = +2
Query: 176 LYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 355
++CLEHGIQPDG D T ++ NTFF+ET GKHVPR +FVDLEPTVVDEVRTGT
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGT 60
Query: 356 YRQLFHPEQLITG*GXCGHNYA 421
YR LFHPEQL++G + YA
Sbjct: 61 YRSLFHPEQLLSGKEDAANCYA 82
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 96.3 bits (229), Expect = 8e-21
Identities = 46/104 (44%), Positives = 62/104 (59%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE + V GQ G QIG WE+ EHGIQPDG + + + N +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQL--ERINVYYNEANGGK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRAV VDLEP +D VR+G + QLF P+ + G G+N+A
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWA 102
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 96.3 bits (229), Expect = 8e-21
Identities = 45/104 (43%), Positives = 63/104 (60%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRAV VDLEP +D VR+G + QLF P+ + G G+N+A
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWA 102
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 96.3 bits (229), Expect = 8e-21
Identities = 45/104 (43%), Positives = 63/104 (60%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRAV VDLEP +D VR+G + QLF P+ + G G+N+A
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWA 102
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 95.1 bits (226), Expect = 2e-20
Identities = 45/104 (43%), Positives = 63/104 (60%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQL--ERIDVYYNEANNGK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRAV VDLEP +D VR+G + QLF P+ + G G+N+A
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWA 102
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 94.7 bits (225), Expect = 2e-20
Identities = 45/104 (43%), Positives = 63/104 (60%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQL--ERIDVYYNEANNGK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRAV VDLEP +D VR+G + QLF P+ + G G+N+A
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWA 102
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 89.8 bits (213), Expect = 7e-19
Identities = 43/104 (41%), Positives = 58/104 (55%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQL--ERINVYYNEASGGK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRA VDLEP +D VR G + QLF P+ + G G+N+A
Sbjct: 59 YVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWA 102
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 83.4 bits (197), Expect = 6e-17
Identities = 41/104 (39%), Positives = 60/104 (57%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRA+ VDL+P ++ VR+ Y +LF PE ++G G+N++
Sbjct: 59 YVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWS 102
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 83.4 bits (197), Expect = 6e-17
Identities = 41/104 (39%), Positives = 60/104 (57%)
Frame = +2
Query: 110 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 289
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 290 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITG*GXCGHNYA 421
+VPRA+ VDL+P ++ VR+ Y +LF PE ++G G+N++
Sbjct: 59 YVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWS 102
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 57.2 bits (132), Expect = 5e-09
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Frame = +2
Query: 122 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 301
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 302 AVFVDLEPTVVD-EVRTGTYRQLFHPEQLITG--*GXCGHNYA 421
AV VDLEP V++ +++ + LF+ + + G G+N+A
Sbjct: 65 AVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWA 107
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 57.2 bits (132), Expect = 5e-09
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Frame = +2
Query: 122 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 301
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 302 AVFVDLEPTVVD-EVRTGTYRQLFHPEQLITG--*GXCGHNYA 421
AV VDLEP V++ +++ + LF+ + + G G+N+A
Sbjct: 65 AVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWA 107
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 138 AKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELAST 293
A P MP+ S + S++SS M + P+ PS ++T+L+++ + E AST
Sbjct: 189 ATPALLPFMPSSSTFSASSSSSEMEQTPE--PSSLDTVLTSMMNNNEEAAST 238
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 152 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 331
QI +C CL +G++P G P I G FF+++G ++ F ++ P
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSGLKRN---KKFANVSPQT 115
Query: 332 VDE 340
DE
Sbjct: 116 ADE 118
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 152 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 331
QI +C CL +G++P G P I G FF+++G ++ F ++ P
Sbjct: 81 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSGLKRN---KKFANVSPQT 133
Query: 332 VDE 340
DE
Sbjct: 134 ADE 136
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 152 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 331
QI +C CL +G++P G P I G FF+++G ++ F ++ P
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSGLKRN---KKFANVSPQT 115
Query: 332 VDE 340
DE
Sbjct: 116 ADE 118
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 260 TFFSETGAGKHVPRAVFVDLEPTVVD 337
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 260 TFFSETGAGKHVPRAVFVDLEPTVVD 337
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 260 TFFSETGAGKHVPRAVFVDLEPTVVD 337
T ++ TG+GK++ F DL P + D
Sbjct: 131 TTYTSTGSGKNIEYITFFDLTPIIKD 156
>Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical
protein R166.5a protein.
Length = 705
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 185 LEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE 322
L H Q D +P + +GGG +F+ + +HV + F D E
Sbjct: 29 LNHLGQVDN-IPNNSAVGGGGAAFHHLHTSAATPRHVATSEFYDDE 73
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 209 GQMPTDKTIGGGDDSFNTFFSE-TGAGKHVPRAVFVDLEPTVVDEVRTGT 355
GQMPTDK + S NT +S+ T A + + + P+ V V T
Sbjct: 156 GQMPTDKNVNSVITSDNTTYSDVTTAPQACDKTIIQSDCPSTVAPVTCST 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,324,082
Number of Sequences: 27780
Number of extensions: 218744
Number of successful extensions: 546
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -