Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_I12
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.84 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 224 PKFLNFPSLVYFNCT 180
           PKFL  P++VYF+ T
Sbjct: 23  PKFLGQPTIVYFHVT 37


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 276 KVFFGGYRLFLSSITNETEVSEFSIFGIFQLYVGNLSFLTKQFSKMIDC 130
           KV F  + LFL + T    V+   ++G  +L     + L   F+K + C
Sbjct: 282 KVAFTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSC 330


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 276 KVFFGGYRLFLSSITNETEVSEFSIFGIFQLYVGNLSFLTKQFSKMIDC 130
           KV F  + LFL + T    V+   ++G  +L     + L   F+K + C
Sbjct: 282 KVAFTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSC 330


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 98  VLLLKICLTRLQSIILENCLVRKERL 175
           ++ +++C T LQ+ + E  L++ ER+
Sbjct: 133 LITMELCGTTLQNRLDEAILIKNERI 158


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 288 ASAIKVFFGGYRLFLSSITNETE 220
           ASAIK       LF+ ++T ETE
Sbjct: 2   ASAIKALLIVCALFIYTVTAETE 24


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 288 ASAIKVFFGGYRLFLSSITNETE 220
           ASAIK       LF+ ++T ETE
Sbjct: 2   ASAIKALLIVCALFIYTVTAETE 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,678
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)