Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_I10
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 133 2e-32
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.33
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 28 1.3
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.8
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.8
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 7.2
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 7.2
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 7.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.2
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 133 bits (322), Expect = 2e-32
Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Frame = +3
Query: 150 WDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 329
+++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP
Sbjct: 19 FEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLP 78
Query: 330 HIKGNVGFVFTRGDLVXVRDN-CWRTSPAPXRPGAIGPLSVVIXGHNTGLGPXXNSFFQA 506
++GNVGFVFT DL VR+ AP RP AI PL V + NTG+ P SFFQA
Sbjct: 79 VVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQA 138
Query: 507 LSIPTKIQR 533
L IPTKI R
Sbjct: 139 LGIPTKITR 147
Score = 62.5 bits (145), Expect = 5e-11
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +2
Query: 515 PYQDSKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 646
P + ++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGM 185
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 247 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 354
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -2
Query: 289 SLMALRIIVFFPMSTILEPRSEXXXXXXXCEPTLSAPTMKHFGYSSQELDDLNEVVRLPS 110
S+ A+ I FP L+P + P+L +M H ++ + + L S
Sbjct: 103 SVFAMAICTTFPHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDS 162
Query: 109 SLVL 98
SL+L
Sbjct: 163 SLIL 166
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 313 RAGLLSRWSLMALRIIVFFPMSTILEPR 230
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 391 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 266
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 165 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 311
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 10 EFCPARKSCVLSCP*ISSKSLRH 78
E PA++ LSCP + SK + H
Sbjct: 489 EIVPAKERAYLSCPKVWSKIINH 511
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 14 FVPHGSRAFCLVLKFHRSPYA 76
F+PHG+R + +LK+ R Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 473 PGVVAGNDD*QWANGTRT-XWSWTCSPTVVTDXN 375
P AGN W NGT+T W+ +P V N
Sbjct: 900 PAWNAGNKTPSWNNGTKTPAWNANQTPMVANGTN 933
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 280 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLXSVTTV 396
PS + W T+ SR SR +S SP+ S T+
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTI 225
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 407 TCSPTVVTDXNEVSAGEHEANVALDVWQQFLEGWIVVQVVF 285
T +P + + + + EHE NV DV ++ VVQV F
Sbjct: 228 TKAPVIFSHSSAYTLTEHERNVRDDVLERLKTNGGVVQVNF 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,800
Number of Sequences: 5004
Number of extensions: 58074
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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