Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_I10
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 133 1e-31
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 133 1e-31
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 133 1e-31
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 30 1.4
02_02_0488 - 10863248-10863960,10865933-10866269 30 1.4
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 29 4.2
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 9.8
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 9.8
03_01_0506 + 3816676-3817971 27 9.8
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 133 bits (322), Expect = 1e-31
Identities = 69/130 (53%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Frame = +3
Query: 153 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLL 326
DEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+
Sbjct: 23 DEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELM 82
Query: 327 PHIKGNVGFVFTRGDLVXVRDNCWRTS-PAPXRPGAIGPLSVVIXGHNTGLGPXXNSFFQ 503
P + GNVG +FT+GDL VR+ + AP R G + P+ VV+ NTGL P SFFQ
Sbjct: 83 PLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQ 142
Query: 504 ALSIPTKIQR 533
L+IPTKI +
Sbjct: 143 VLNIPTKINK 152
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +2
Query: 515 PYQDSKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLV 649
P + +KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLV 191
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 133 bits (321), Expect = 1e-31
Identities = 69/130 (53%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Frame = +3
Query: 153 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLL 326
DEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+
Sbjct: 23 DEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELM 82
Query: 327 PHIKGNVGFVFTRGDLVXVRDNCWRTS-PAPXRPGAIGPLSVVIXGHNTGLGPXXNSFFQ 503
P + GNVG +FT+GDL VR+ + AP R G + P+ VV+ NTGL P SFFQ
Sbjct: 83 PLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQ 142
Query: 504 ALSIPTKIQR 533
L+IPTKI +
Sbjct: 143 VLNIPTKINK 152
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +2
Query: 515 PYQDSKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLV 649
P + +KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLV 191
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 133 bits (321), Expect = 1e-31
Identities = 69/130 (53%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Frame = +3
Query: 153 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLL 326
DEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+
Sbjct: 23 DEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELM 82
Query: 327 PHIKGNVGFVFTRGDLVXVRDNCWRTS-PAPXRPGAIGPLSVVIXGHNTGLGPXXNSFFQ 503
P + GNVG +FT+GDL VR+ + AP R G + P+ VV+ NTGL P SFFQ
Sbjct: 83 PLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQ 142
Query: 504 ALSIPTKIQR 533
L+IPTKI +
Sbjct: 143 VLNIPTKINK 152
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +2
Query: 515 PYQDSKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLV 649
P + +KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLV 191
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 425 RTXWSWTCSPTVVTDXNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 267
++ W + V G HEA+ L W+ + GW + F GFA H
Sbjct: 168 KSFWKYYSGQAVAPYPTIFIGGNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>02_02_0488 - 10863248-10863960,10865933-10866269
Length = 349
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 333 IKGNVGFVFTRGDLVXVRDNCWRTSPAPXRPGAIGPLSVVIXGHNTGL 476
+ G V FVF V R N W SP P + + + G +TGL
Sbjct: 175 VYGTVDFVFGNAAAVLQRCNLWSRSPLPGQKNTVTAQNRRDPGQSTGL 222
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 136 DHPTLGTSTQNVSSWVPITWARNRCSRSVSR 228
+H +G Q+ SWVP+ A C R SR
Sbjct: 741 EHNPVGRGKQHAKSWVPMPLAVGSCIRLASR 771
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 159 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 248
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 329 WQQFLEGWIVVQVVFDGFAHHCV 261
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>03_01_0506 + 3816676-3817971
Length = 431
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +2
Query: 41 CLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLGRVPKMFHRGCR*RGLATDAADP 220
CL L+ RS Y +++ + ++ ++ ++ ++ + G + C L DA DP
Sbjct: 107 CL-LRLSRSDYGSVASLNKDFRSLVRNGEIYRLRRQSGVAEHWVYFSCN--VLEWDAYDP 163
Query: 221 YLATWLQ 241
Y W+Q
Sbjct: 164 YRERWIQ 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,785,460
Number of Sequences: 37544
Number of extensions: 424842
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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