Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H21
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    28   5.0  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   6.6  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   6.6  

>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 187 SSELLRLXLDHTFIDRLKDT-KAXKHKQYTFRYKNLVKSKLDLNIKTLK 44
           + EL+++  +   +D L DT KA +HKQ+T  ++ ++   ++L +   K
Sbjct: 16  AEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKK 64


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 187  SSELLRLXLDHTFIDRLKDTKAXKHKQYTFRYKNLVKSKLDLNIKTLKMAAT 32
            S + +++ L HT +  L+  +     QY   Y  L   K     K++++AAT
Sbjct: 1789 SKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKSVRVAAT 1840


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 187  SSELLRLXLDHTFIDRLKDTKAXKHKQYTFRYKNLVKSKLDLNIKTLKMAAT 32
            S + +++ L HT +  L+  +     QY   Y  L   K     K++++AAT
Sbjct: 1789 SKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKSVRVAAT 1840


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,157,946
Number of Sequences: 27780
Number of extensions: 211617
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)