Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H12
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 128 HFTFTETLGISGYFARSPFQEIILKPC 48
           H+      G  G+F RS  Q+I  +PC
Sbjct: 78  HYGVHSCEGCKGFFRRSIQQKIQYRPC 104


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 462  HCSIHVTSVTQVDETL 415
            HC+IH T V + D+ +
Sbjct: 1686 HCTIHRTQVKETDDKI 1701


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 364 FVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 471
           F  D+N ++L   +++P  +   G    ++ TVQ +
Sbjct: 160 FAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAM 195


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 231 LSLWLDPCQCKYLRLEQYRFIVCIHLHIWVHFLAPF 124
           ++LWL+P   + + +    FI+ +   + V +  PF
Sbjct: 263 MTLWLEPSSTERMIIANLNFILHLFCLLDVQWRIPF 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,760
Number of Sequences: 438
Number of extensions: 4283
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)