Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H08
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z75542-5|CAA99863.1|  179|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    27   8.7  

>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 468 PTTPRIT*WTSNATAYGRTTHVRTSKSPAPSTRSQRGIQNMPGGPQHSNIAAQRTT 635
           PTTP  T  T+  T    TT   T+ +PAP+T  +         P  ++  +  TT
Sbjct: 414 PTTPLPTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTPAPTTTSTTSIPTT 469


>AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical
           protein F32B5.7 protein.
          Length = 792

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 380 GCEDGGPFTCWLYGLCGECGGAG 312
           GC+      C   G CG CGG G
Sbjct: 758 GCDGAACGACGACGACGACGGCG 780



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 395 GPPLDGCEDGGPFTCWLYGLCGECGGAG 312
           G   DG   G    C   G CG CGG G
Sbjct: 756 GVGCDGAACGACGACGACGACGGCGGCG 783


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 533 QDLQVTSPIHQVPTGHPKYARRATAFQYSSP 625
           +D + +SP+   P G P Y +R + FQ   P
Sbjct: 213 EDSRSSSPMEAPPVGGPLYGKRLSLFQPRKP 243


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 533 QDLQVTSPIHQVPTGHPKYARRATAFQYSSP 625
           +D + +SP+   P G P Y +R + FQ   P
Sbjct: 119 EDSRSSSPMEAPPVGGPLYGKRLSLFQPRKP 149


>Z75542-5|CAA99863.1|  179|Caenorhabditis elegans Hypothetical
           protein F55D12.6 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 273 ATGAKPNGTSNPKPGAAAFAA 335
           A+ AKP   S P+PG AA AA
Sbjct: 79  ASSAKPGDVSTPQPGGAAKAA 99


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 533 QDLQVTSPIHQVPTGHPKYARRATAFQYSSP 625
           +D + +SP+   P G P Y +R + FQ   P
Sbjct: 213 EDSRSSSPMEAPPVGGPLYGKRLSLFQPRKP 243


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 533 QDLQVTSPIHQVPTGHPKYARRATAFQYSSP 625
           +D + +SP+   P G P Y +R + FQ   P
Sbjct: 119 EDSRSSSPMEAPPVGGPLYGKRLSLFQPRKP 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,351
Number of Sequences: 27780
Number of extensions: 304411
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)