Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H08
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 HIHRVVGRHQFLTICLLPEL*QPMLMVHRVFPNN 475
           +I +V G  ++  I     + QP   VH+V+P N
Sbjct: 12  YIRQVYGEDRWEEIRRQASVEQPSFSVHQVYPEN 45


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 453 STGCFPTTPRIT*WTSNATAYGRTTHVRTSKSPAPSTRSQRGIQN 587
           +TG  P TP     TSNATA      + T  +  P+ R ++  QN
Sbjct: 233 ATGTGPATPSAVVATSNATA-----AMTTGTTTIPTRRLRKRRQN 272


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = -2

Query: 365 GPFTCWLYGLCGECGGAG-LW 306
           GP  C +Y + G   G G +W
Sbjct: 121 GPLFCQIYAMLGSLFGCGSIW 141


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = -2

Query: 365 GPFTCWLYGLCGECGGAG-LW 306
           GP  C +Y + G   G G +W
Sbjct: 87  GPLFCQIYAMLGSLFGCGSIW 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,284
Number of Sequences: 438
Number of extensions: 3805
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)