Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_H07
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 58 4e-10
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 57 1e-09
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.35
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 28 0.46
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 1.1
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 1.8
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 4.3
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 4.3
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 5.6
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 5.6
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 7.4
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 7.4
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 24 9.8
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 58.4 bits (135), Expect = 4e-10
Identities = 26/53 (49%), Positives = 41/53 (77%)
Frame = +1
Query: 193 RQVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 351
++VP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q IYTRA
Sbjct: 32 KEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 56.8 bits (131), Expect = 1e-09
Identities = 25/52 (48%), Positives = 40/52 (76%)
Frame = +1
Query: 193 RQVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 348
++VP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q IYTR
Sbjct: 32 KEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.35
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 180 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 67
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 28.3 bits (60), Expect = 0.46
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 202 GLALYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 89
G A SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1003 GKADKSFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 61 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 159
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 324 MLDYLFDETFFPKLDECSSR 265
M D LF E+F +LD C R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 49 PNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCTRQV 201
PNS+K+ +R K P++ +S P+ +T +R + +RN Q+
Sbjct: 153 PNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRNLQEQL 200
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 232 RQQV*LACTVGLALYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 89
R V + C L ++ F +G+ N T P +F+ L PPP
Sbjct: 35 RWVVVIICIAAL-IFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 383 IVYATGSSPLVARV*ITCP*CWTTCLMRP 297
I+Y T ++P++ + +T CW L P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 235 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 342
+ERL + ++ R AL+EL++ LIKQ QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 166 SNNTWLFNLSRTFPLDHFFFLAL 98
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 108 SWLCRHRILPSSSVFFEAVW 49
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 7.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 241 RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 366
R RG++ R +I +EK +++VV G+ TR TK D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 213 LVLWDLPCTVSHMWVYQTTPGCSTCHE 133
++L P T H++VY+ C+ HE
Sbjct: 1 MILPLFPETQVHVFVYENVSNCAAIHE 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,188
Number of Sequences: 5004
Number of extensions: 35084
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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