Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H07
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    83   7e-17
Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    31   0.40 
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.91 
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    27   3.7  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   6.4  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   6.4  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   8.5  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   8.5  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    26   8.5  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 83.0 bits (196), Expect = 7e-17
 Identities = 40/60 (66%), Positives = 48/60 (80%)
 Frame = +1

Query: 193 RQVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 372
           ++V  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 56  KEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115



 Score = 34.3 bits (75), Expect = 0.032
 Identities = 21/59 (35%), Positives = 23/59 (38%)
 Frame = +3

Query: 18  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYK 194
           MPPKKD K     P                            LNN VLFD+ TY+KLYK
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYK 56


>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 213 LVLWDLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSW 103
           L+ WD+ C       ++T+  C  C++ F W   + W
Sbjct: 271 LMCWDMNCKRVETPEWKTSDCCQKCNQPFFWNLQAMW 307


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 284 SMSALLAREPRTFNLSDTTAGVISLYCGTCLVQFLIC 174
           S++  ++ E   F+LSDT   ++ L+CG   +  +IC
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCGIPSLVMMIC 38


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 272 LLAREPRTFNLSDTTAGVISLYCGTCLVQFLICGFIKQHLVVQLVTNFSFGPLLLL 105
           +L + P+T N       +++ +C  C V  LIC  I  +     ++ F  G L +L
Sbjct: 52  ILQKTPKTMNSVKWV--LLNTHCWCCYVDILICSLITPYFFFPTISGFPVGLLRVL 105


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 130
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 299 PFSLSSMSALLAREPRTFNLSDTTAGVI-SLYCGTCLVQFLICGFIKQHLVVQLVTNFSF 123
           P    ++  +  + P+T    D+   VI + +C  C V  L+C  I  +     ++ F  
Sbjct: 43  PMHALTIHCIFNKTPKTM---DSVKWVIFNTHCWCCYVDILVCSLITPYFFFPTLSGFPV 99

Query: 122 GPLLLLG 102
           G   +LG
Sbjct: 100 GLFRVLG 106


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 62
            protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 2    AFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 133
            AFQ +++ QE        A  NT ++     + SQ  EVV ++S
Sbjct: 1077 AFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 244 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 348
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 70  RRRRKDPVAAKPRRRSGP 123
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 70  RRRRKDPVAAKPRRRSGP 123
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 323 CWTTCLMRPFSLSSMSALLAREP 255
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 72  SVFFEAVWPKPSR 34
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = -3

Query: 168 YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 82
           YQ    CS    TC   F W     W CR R++
Sbjct: 365 YQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,521,554
Number of Sequences: 27780
Number of extensions: 201012
Number of successful extensions: 579
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)