Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H01
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    24   10.0 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   10.0 
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    24   10.0 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   10.0 
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    24   10.0 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    24   10.0 

>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 124 TNSASLPWRKSLQAPHHGMNYQ 189
           TN   + W  +LQAPH  +  Q
Sbjct: 844 TNRVVICWGATLQAPHRAVRLQ 865


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 176 PWWGA*SDFRHGSDALF 126
           P+W   SDF H S+AL+
Sbjct: 659 PYWHRNSDFSHISEALY 675


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 55  FYTLCITQYATIKXWKNC 2
           FY  C T+Y     WK C
Sbjct: 123 FYDECQTKYGNANVWKYC 140


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 120 KNLDAIWRVTNIFXCSALCVVSFIHFVSRSTQL 22
           K +D +WR  + +  S  C ++  + VS ST++
Sbjct: 397 KKID-LWRPFSFWLFSIFCTIAAYYLVSSSTKI 428


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 LHLDSSNKQCVATMAKVTSSPPPWXELPVP 194
           L L   +KQ + T  K +S PPP   LP P
Sbjct: 235 LILREQSKQ-IPTQQKPSSLPPPERALPAP 263


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 202 EPLGTGNSXHGGGLEVTFAMVATHCLLEESR 110
           E + T +  HGG LE    + A HC++   R
Sbjct: 584 EEISTVDLPHGGQLENAQFLNAEHCVIISQR 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,356
Number of Sequences: 5004
Number of extensions: 25191
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)