Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H01
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    32   0.19 
12_01_0610 + 5030130-5030247,5030957-5033193                           27   7.2  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    26   9.5  

>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 99  AKLHLDSSNKQCVATMAKVTSSPPPWXELPVPKGSWQSHHDANQRR 236
           A +H+ + +++  A   + T + PP    P P  S Q HH  ++RR
Sbjct: 287 ASVHMQTRSRELAAARQRDTHAAPPPPPPPPPPSSSQLHHMISERR 332


>12_01_0610 + 5030130-5030247,5030957-5033193
          Length = 784

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 196 LGTGNSXHGGGLEVTF 149
           +G G   HGGGLE+TF
Sbjct: 665 VGCGQVAHGGGLEMTF 680


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 123 WKNLDAIWRVTNIFXCSALCVVSFIH 46
           WKN+ A WR+  ++    LC+    H
Sbjct: 848 WKNVSATWRLPLLYSFEELCLPIDFH 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,418
Number of Sequences: 37544
Number of extensions: 192696
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)