Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_H01
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   1.6  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   1.6  
Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z66520-12|CAN86922.1|  220|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical p...    26   8.7  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 221  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 343
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 221  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 343
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical
           protein E01G4.1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 102 KLHLDSSNKQCVATMAKVTSSPPPWXELPVPKGSWQSHHDAN 227
           ++H D++ +  V T  ++   P  + ELPV K  W S   +N
Sbjct: 261 RVHSDAAGEFEVVTQLELPPRPEIYRELPVSKDLWNSFKLSN 302


>Z66520-12|CAN86922.1|  220|Caenorhabditis elegans Hypothetical
           protein F49E12.9b protein.
          Length = 220

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 222 HHGATA-MSLWALVIHXMVGGLK*LSP-W*RRTVCWKNLDAIWRVTNIFXCSALCVVSFI 49
           HH  TA +S+ ++  H +   +  LSP     T+C  ++  +W   +I   S  C  S  
Sbjct: 144 HHEWTAPVSITSIYCHPLEHAISNLSPVLLGPTICGSHVITLWIWASIAILSTTCSHSGY 203

Query: 48  HF 43
           HF
Sbjct: 204 HF 205


>Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9a protein.
          Length = 269

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 222 HHGATA-MSLWALVIHXMVGGLK*LSP-W*RRTVCWKNLDAIWRVTNIFXCSALCVVSFI 49
           HH  TA +S+ ++  H +   +  LSP     T+C  ++  +W   +I   S  C  S  
Sbjct: 144 HHEWTAPVSITSIYCHPLEHAISNLSPVLLGPTICGSHVITLWIWASIAILSTTCSHSGY 203

Query: 48  HF 43
           HF
Sbjct: 204 HF 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,496,459
Number of Sequences: 27780
Number of extensions: 154397
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)