Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_G21
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   1.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.7  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 MTLPRPQVTGKGLKNHWAAD 312
           +T+P PQ   KG+ N +  +
Sbjct: 54  LTIPVPQAANKGMINQYGGE 73


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 235 LLKRWVMTLPRPQVTGKGLKNH 300
           L+ RWV  +P   VT     NH
Sbjct: 332 LIDRWVANVPNGSVTNWVSGNH 353


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 253 SPTFLGDRPRGPILGAKDDV-APTSP 179
           +P F    P  P+ GA DD+  P SP
Sbjct: 468 APCFEEPLPSLPLPGADDDLFGPASP 493


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 146 IWVKLRGHFVDYLVQLYTIITLNPN 72
           +W K   +   Y+  LYT +   P+
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPD 153


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 146 IWVKLRGHFVDYLVQLYTIITLNPN 72
           +W K   +   Y+  LYT +   P+
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPD 153


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 319  LNCQLPSDS*DPXQSLVALAMSSPTFL 239
            ++CQ   D+ +   ++ AL MSS + L
Sbjct: 1171 IHCQTEQDAPEAPIAIKALVMSSESIL 1197


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 129 PKFDPNEIKIVNLRCVGGEVGATSSLA 209
           P   PN  K++      GE G  +SLA
Sbjct: 588 PDPXPNTCKVIASSVSAGEEGLGNSLA 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,440
Number of Sequences: 438
Number of extensions: 2125
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)