Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_G16
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673... 116 2e-26
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139... 59 3e-09
05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382 58 5e-09
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760... 30 1.8
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 28 7.4
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 27 9.8
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 27 9.8
>12_02_0360 -
17966857-17966865,17966866-17966954,17967276-17967399,
17967639-17967717,17968267-17968352,17968471-17968661,
17970496-17970560,17971192-17971282,17971705-17971801,
17971883-17972128,17972248-17972505
Length = 444
Score = 116 bits (278), Expect = 2e-26
Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 6/144 (4%)
Frame = +2
Query: 236 LRNGGIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAK 415
+R GG+ P +A++ H I+ V + L AN+ D+SA+AVTV PGL L L VG+ A+
Sbjct: 148 VRWGGVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKAR 207
Query: 416 HLARVNAKPIIPIHHMEAHALT-----VRM-EHNVNFPYLVLLISGGHCLLAVVQNINKF 577
+A+ PI+ +HHMEAHAL VR+ +++FP+L LLISGGH LL + + ++
Sbjct: 208 KIAKSFRLPIVGVHHMEAHALVSSSIDVRLVNKDLDFPFLALLISGGHNLLVLAHGLGQY 267
Query: 578 LLLGKSIDMAPGELFDKIARRMKL 649
+ LG +ID A GE +DK AR + L
Sbjct: 268 VQLGTTIDDAIGEAYDKSARWLGL 291
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 83 TFQKLRPLTNSKCNSTLIF-GIETSCDDT 166
TF+ L + ++ + L+ GIETSCDDT
Sbjct: 54 TFRSLATMPSAAAAADLLMLGIETSCDDT 82
>01_02_0069 -
10813467-10813475,10813476-10813564,10813865-10813988,
10814227-10814305,10815298-10815388,10815808-10815904,
10816197-10816241,10816369-10816464
Length = 209
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +2
Query: 302 VTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLARVNAKPIIPIHHMEAHALT 481
V + L AN+ D+SA+AVTV PGL L L VG+ A+ +A+ PI+ +HHMEA AL
Sbjct: 49 VQKALDNANVSESDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFHLPIVGVHHMEAQALV 108
Query: 482 VRMEHNV 502
R ++
Sbjct: 109 SRSTDDI 115
>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
Length = 441
Score = 58.4 bits (135), Expect = 5e-09
Identities = 35/134 (26%), Positives = 67/134 (50%)
Frame = +2
Query: 248 GIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLAR 427
G +P H ++ P + L +A + D++ + T PG+ L V A+ L+
Sbjct: 113 GFLPRETAHHHLAHLLPLLRAALGEAGVTPADLACVCYTKGPGMGAPLQVAAAAARALSL 172
Query: 428 VNAKPIIPIHHMEAHALTVRMEHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSIDMA 607
+ KP++ ++H AH R P +VL +SGG+ + + + ++ + G++ID+A
Sbjct: 173 LWGKPLVGVNHCVAHVEMGRAVTGAVDP-VVLYVSGGNTQV-IAYSEGRYRIFGETIDIA 230
Query: 608 PGELFDKIARRMKL 649
G D+ AR ++L
Sbjct: 231 VGNCLDRFARVLEL 244
>04_04_0929 -
29474540-29475247,29475485-29475850,29476032-29476093,
29476191-29476302,29476401-29476529,29476724-29476738
Length = 463
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 632 QFYQIVHLVPCLYFYLEGGTCLYF-GPQPISNDHQ 531
Q + + +PC ++ EG TC F PQ +++D Q
Sbjct: 323 QIFSVHSALPCFTYHNEGVTCTQFSNPQVVASDQQ 357
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 514 IWEINIVFHSDCQCMCFHMVNRNYRF 437
+ EI++V+ S+ C+C + V R Y F
Sbjct: 86 VMEISLVYSSEHNCLCIYGVVRRYYF 111
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 245 GGIIPDVAQDLHRKYIEPTV 304
GG++PDV Q+ + KY PT+
Sbjct: 291 GGMVPDVNQNCYEKYEMPTL 310
>03_05_0815 +
27917516-27917767,27918024-27918110,27918281-27918394,
27919644-27919835,27919925-27921677,27921771-27922708,
27923587-27923859
Length = 1202
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 204 AMIFPSSLIMAHPVSSHDVSIPNIKVELHLEFVKGLNF 91
AM PSS+I VSS V + K+ L++E + L F
Sbjct: 298 AMFLPSSVIPVFRVSSSRVIMSRYKISLYVEILAILAF 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,145
Number of Sequences: 37544
Number of extensions: 309268
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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