Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_G13
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    24   4.2  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   4.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    24   4.2  
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    23   9.6  
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe...    23   9.6  

>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 164 GMTPRKMCLCIRLPSPVTTH 223
           G+TP+ + +  +LP PV +H
Sbjct: 268 GVTPQNVVMMSKLPEPVYSH 287


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 133 NVKSGYGFINRNDTKEDVFVHQTAIARNNPRK 228
           N K  Y + + ++  E +F   T I  NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 118 TVKWFNVKSGYG-FINRNDTKEDV 186
           T+KW N+ SG G F+ + +  ED+
Sbjct: 879 TIKWDNLNSGPGPFVPQTENVEDL 902


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 154 FINRNDTKEDVFVHQTAI 207
           F +R   KED FVHQ  I
Sbjct: 41  FESREKAKEDFFVHQHEI 58


>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 216 VTGDGSLMHKHIFLGVIPVDETIST 142
           +  DG       FLG++ V+E IST
Sbjct: 49  LVNDGERTSNDCFLGLLGVEEDIST 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,464
Number of Sequences: 5004
Number of extensions: 13169
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)