Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_G13
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 64 3e-11
02_01_0158 - 1103461-1104186 61 1e-10
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 2.7
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 2.7
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 27 3.6
03_05_0433 - 24245560-24245946 27 3.6
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 26 6.3
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112 26 6.3
07_01_0914 - 7693305-7693513,7693613-7694111,7694716-7696316,769... 26 6.3
03_05_1141 - 30701077-30701167,30701264-30701382,30701495-307016... 26 6.3
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 25 8.3
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 25 8.3
>08_01_0202 - 1638978-1639571
Length = 197
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +1
Query: 100 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 279
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 280 GEKG 291
G G
Sbjct: 59 GNDG 62
>02_01_0158 - 1103461-1104186
Length = 241
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = +1
Query: 100 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 279
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 280 GEKG 291
E G
Sbjct: 60 SEDG 63
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 109 VSGTVKWFNVKSGYGFINRNDTKE 180
V+ VKW +KSG F N KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 199 TAIARNNPRKAVRSVGDGEAVEFAVVAG 282
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 200 LPSPVTTHVRLCARSATERRWSLPW 274
LP + H+R A +AT RWSL W
Sbjct: 35 LPPVLALHLRAAA-TATAARWSLAW 58
>03_05_0433 - 24245560-24245946
Length = 128
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 267 KLHRLSVADRAHSLTWVVTGDGS 199
++ RLS+ A + W +TGDGS
Sbjct: 55 EVQRLSLTSEADRIKWKLTGDGS 77
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 285 LPGNHGKLHRLSVADRAHS 229
LPG+ GKLHRL + D ++
Sbjct: 117 LPGDIGKLHRLELLDLGYN 135
>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
Length = 254
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 94 VIAEKVSGTVKWFN 135
+++E+V GTVKWF+
Sbjct: 1 MVSERVKGTVKWFD 14
>07_01_0914 -
7693305-7693513,7693613-7694111,7694716-7696316,
7696509-7696530
Length = 776
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 237 AHSLTWVVTGDGSLMHKHIFLGVIPVDETISTLDVEPF 124
AHSL W G+ +H FLG + S +VE F
Sbjct: 485 AHSLFWDFNDAGTTLHSLDFLGQSSIRFPTSDQEVELF 522
>03_05_1141 -
30701077-30701167,30701264-30701382,30701495-30701622,
30701683-30701914
Length = 189
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 149 YPLLTLNHFTVPDTFSAMTCFCLT 78
YP+ HF +T +A TC C+T
Sbjct: 72 YPVAAHVHFAFHETDTACTCACVT 95
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 129 VQRQEWIWFHQQE*HQGRCVCASDCHR 209
++RQ WIW H +G + CH+
Sbjct: 254 LRRQLWIWIHPSALSEGLETLRAACHQ 280
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 125 NGSTSRVDMVSSTGMTPRKMCLCIRLPSP 211
NGS SR + SS G+T C+ SP
Sbjct: 179 NGSGSRAEAQSSPGLTSELFAPCLNSCSP 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,440
Number of Sequences: 37544
Number of extensions: 96897
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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