Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_G06
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    29   0.23 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   2.2  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    26   2.8  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   2.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   3.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.6  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    24   8.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   8.7  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    24   8.7  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 306 LLKILLAFASGGLLGDAFLHLIP 374
           +L + +A ++G LLGD FL L+P
Sbjct: 165 MLNLFVAVSAGSLLGDVFLQLLP 187


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 141 FKYSKHANEQKEHDKIYEPDYNLYVSALCST 233
           +  S   N+ +    + EPD+NL V A+C T
Sbjct: 118 YTVSAKINDVEVVKVLLEPDFNLNVDAICET 148


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 369 LNAGTHRRGVHQTRKLG 319
           +N  +H RG+ +TRKLG
Sbjct: 247 MNCNSHLRGIKRTRKLG 263


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 42  KMFVRSGIAYFALIVTFTIVYAHSHSHSDESPAFKYSKHANEQ-KEHDKIYEPDYNL 209
           +M  ++   YF    T  ++ A + + + E P FK+   +  +  + + +YE  ++L
Sbjct: 120 RMLPQNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPIFSKRKYNDTENLYEQPFHL 176


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 200 IWFINFIMFFLFVGMFGV 147
           IW   FI+F  F+ +FGV
Sbjct: 197 IWVTVFIVFLFFINIFGV 214


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 349 PRSPPDAKARSILSKGCFSIVPSMGIKKSIKNG 251
           PR    A  + + SK C   + S G+ K +KNG
Sbjct: 542 PRVEKSAVPQELCSKKCCDGILSGGLCKKLKNG 574


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 200 IWFINFIMFFLFVGMFGV 147
           IW   FI    FV MFGV
Sbjct: 197 IWITVFIALLCFVNMFGV 214


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +3

Query: 63  IAYFALIVTFTIVYAHSHSHSDESPAFKYSKHAN 164
           +++  L+V    + A +H H+ +  +  +  H+N
Sbjct: 456 VSFLGLVVNLVGILAFNHGHNHDHGSHHHHSHSN 489


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 319 SILSKGCFSIVPSMGIKKSIKNGTILINNVEHKALTYKL 203
           SIL K    I+P + I+ S+K    +++ VE+  + Y L
Sbjct: 325 SILEKSKIKILPPILIRDSLKYSKPIMSQVENFFVHYPL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,283
Number of Sequences: 5004
Number of extensions: 33709
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)