Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_G06
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   4.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   4.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   5.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 203 VIWFINFIMFFLFVGMFGVL 144
           VI +INF  FF   GM  VL
Sbjct: 6   VIKYINFDRFFFIEGMTNVL 25


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 387 PHNDKQGHSXSHSHS 431
           PH+   GH  SH H+
Sbjct: 414 PHHHTMGHGHSHIHA 428


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 111 SHSHSDESPAFKYSKH 158
           S SHS E  +FK SKH
Sbjct: 702 SGSHSWEGDSFKVSKH 717


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 292 IVPSMGIKKSIKNGTILINNVE 227
           ++P    +K   NGT++I NVE
Sbjct: 530 VLPINRKQKVFPNGTLIIENVE 551



 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 265 SIKNGTILINNVE 227
           S+++GT+ INN++
Sbjct: 734 SVEDGTLSINNIQ 746


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 123 SDESPAFKYSKHANEQKEHDKIYEPDYN 206
           S  S  +KYS + N    ++  Y  +YN
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 123 SDESPAFKYSKHANEQKEHDKIYEPDYN 206
           S  S  +KYS + N    ++  Y  +YN
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 123 SDESPAFKYSKHANEQKEHDKIYEPDYNLYVSAL 224
           S  S  +KYS + N    + K+Y  +Y + +  +
Sbjct: 83  SSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQI 116


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 221 FVFYIVYKYSAILYTF 268
           FVF  + +Y+A+ YT+
Sbjct: 314 FVFAALLEYAAVNYTY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,638
Number of Sequences: 438
Number of extensions: 2225
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)