Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_G02
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 169 2e-43
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 35 0.007
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 30 0.26
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 4.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.5
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 5.5
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 5.5
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.6
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 9.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.6
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 169 bits (412), Expect = 2e-43
Identities = 80/111 (72%), Positives = 96/111 (86%)
Frame = +1
Query: 211 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 390
E+ +ILEERI GA +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94
Query: 391 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAXGNPIDG 543
E D VG V+FGND+L++EG++VKRT IVDVPVGE +LGRVVDA GNPIDG
Sbjct: 95 EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDG 145
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 409 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAXGNPID 540
+ + G + L++ G V TG+ + +PVG LGR+++ G P+D
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVD 150
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 463 TGAIVDVPVGEQILGRVVDAXGNPID 540
TG + +PV E +LGRV + G PID
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID 117
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 349 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 248
P P G HK ++ CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 495 LSNGNVYDSTSTLDNISFLDKLVIT 421
L GN+Y+STS + +S LD IT
Sbjct: 49 LEVGNIYNSTSASEILSTLDAKYIT 73
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 512 TRPRICSPTGTSTIAP 465
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 170 HLANYMSQPPTKLPRSPPSSKRGSLEP 250
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 158 QWPWHLANYMSQPPTKLPRSPPSSK 232
Q P H N+ S PP P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = -2
Query: 328 SSSHKHERYHHQCSRHDQSLLDQPWARLQGSSLRGWWRS 212
S +H +Y H D L++ +A+ + + W R+
Sbjct: 671 SDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEWLRT 709
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 486 GNVYDSTSTLDNIS 445
GN+Y S +TLDNIS
Sbjct: 225 GNLYFSNTTLDNIS 238
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 149 RCPQWPWHLANYMSQPPTKLPRSPPSSKR 235
R P+ P + QPP+ P +PP+ +R
Sbjct: 56 RLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,068
Number of Sequences: 5004
Number of extensions: 41676
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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