Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_F24
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 63 2e-11
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 43 3e-05
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.3
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 3.1
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 3.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 3.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 4.1
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 5.4
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 5.4
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 25 7.1
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.4
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 63.3 bits (147), Expect = 2e-11
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Frame = +3
Query: 141 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 308
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 309 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 488
S+++SEL A + P + +++Q + A++ + D L ++T+LV R+T
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156
Query: 489 LADVIVFSTC 518
LAD +F TC
Sbjct: 157 LAD--IFFTC 164
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 43.2 bits (97), Expect = 3e-05
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Frame = +3
Query: 147 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQW 308
S D KFP K+P F ADG L + Y+ E L + +A + +W
Sbjct: 40 SADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKW 99
Query: 309 ASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 482
+ + +++ P + WV + G + + ++ + + + + +LK+ + + RT+LV +R
Sbjct: 100 MCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDR 159
Query: 483 ITLADV 500
TLAD+
Sbjct: 160 FTLADL 165
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 277 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 372
+W+P PV SG T+ C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 217 STFPSALSNAGTFPAGNFFKKSSDL 143
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 415 TYWPP*KYWTDIFSHAPSL 471
TY PP Y D+FS APS+
Sbjct: 257 TYLPPFNYDHDVFSFAPSV 275
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 228 SNAIAYYVANESLRGGDLATQARVWQWAS 314
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 325 VNYCLLPVLGSSLTLVSCNSTNRML 399
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 45 IXENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLT 224
I F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 552 IPNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILIN 610
Query: 225 ESN 233
SN
Sbjct: 611 TSN 613
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 280 WLPKPVSGSGHHGLTVNYCLLPV 348
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 268 AEEIWLPKPVSGSGHH 315
A +IWL PVSG H+
Sbjct: 101 AHQIWLSSPVSGPKHY 116
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = -2
Query: 243 KRWHCFQLGALFHRHFRMQALFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 64
K W G ++H+ ++ Q +R W QI + ++S N++R K
Sbjct: 523 KNWGDVSQGIIYHQ---LRKYLLQTNKARENIKFWRPQILLLINNPNRSENVIRFCNSLK 579
Query: 63 RGS 55
+GS
Sbjct: 580 KGS 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,957
Number of Sequences: 5004
Number of extensions: 49805
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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