Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_F23
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...   117   1e-27
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   1.5  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.0  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   2.7  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   6.1  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   6.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.1  

>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score =  117 bits (281), Expect = 1e-27
 Identities = 51/67 (76%), Positives = 59/67 (88%)
 Frame = +2

Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
           MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HVDLIEKLL
Sbjct: 1   MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60

Query: 431 NYSPLEK 451
            Y+PL K
Sbjct: 61  CYNPLSK 67


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 357 SKASPSV*SACSRPK*ASHLFPITFPHVKHRTGI 256
           S +SPS  S  S P    HL P+T PH     G+
Sbjct: 2   SSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGL 35


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 245 NKMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALD-----VLGLKRYCCRRMLLGHV 409
           NK +   +C     V+ N  +A  G+   +   GD L+     +LGL     RR LLG +
Sbjct: 178 NKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKI 237

Query: 410 DL 415
           D+
Sbjct: 238 DI 239


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 439 GIIQEFFNEIHVSEQHSSAAVSFQSKDIQSITFCVIR 329
           G+I E  NE+H+S+  SS   S   +D++ I F   R
Sbjct: 463 GLI-ESTNELHLSDSESSETSSSSEEDMEFIPFSARR 498


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 404 VRATFFCSSIFSIQGHPKHHLLCNPP 327
           + AT+    +   +G P     CNPP
Sbjct: 517 IMATYLADRVILFEGQPSRDARCNPP 542


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 274 ETSYWNNHFVYFLQPKV 224
           E   WNN+  +F+QPK+
Sbjct: 133 ENPNWNNYVRFFIQPKL 149


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 193 LILYNPSASPQL*VVGNKQNDYSSTMFHMREGYRKQMGSLLR 318
           L+  N   +PQ+ +     + Y+S   H++E  RK+    +R
Sbjct: 341 LVALNSDVAPQVSIANIPPSVYASCPLHVQEAIRKRQEQEIR 382


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 95  TVILFFTIHNNIILLRDKNF 36
           +++LFFTI  N   LR  NF
Sbjct: 330 SLVLFFTIFTNAYKLRQTNF 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,140
Number of Sequences: 5004
Number of extensions: 40953
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)