Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_F04
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 182 5e-47
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 31 0.14
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.43
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 29 0.76
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.1
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 26 4.0
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 5.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 7.1
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 9.3
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 182 bits (442), Expect = 5e-47
Identities = 79/153 (51%), Positives = 113/153 (73%)
Frame = +3
Query: 183 LLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQET 362
+L F+++LD+ LLD +V Y VG +Q+ AQ +LT + HPDAW++ +ILE S+ +T
Sbjct: 4 ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63
Query: 363 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 542
KY AL +L+++I TRWK+LP+ Q GI+ YIV ++IKNSSD ++ K +L KL++ L+
Sbjct: 64 KYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLV 123
Query: 543 QVLKREWPHNWETFISDIVGASKTNESLCQNNM 641
Q+LK+EWPHNW FI +IV ASKTN SLC+NNM
Sbjct: 124 QILKQEWPHNWPNFIPEIVQASKTNLSLCENNM 156
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/71 (18%), Positives = 35/71 (49%)
Frame = +3
Query: 363 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 542
++++L + E + WK + E + ++ + +++++ + S KL + I
Sbjct: 70 QHFSLSLFETSVGMNWKSFSNKEKESVTSFLCKISLEDNN----LLSVHFVRSKLASVFI 125
Query: 543 QVLKREWPHNW 575
++ KR+W + W
Sbjct: 126 EIAKRDWYNTW 136
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 29.5 bits (63), Expect = 0.43
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 79 MWINQNNFDFG--KKGTN*LNKYILPEW 156
M+IN N FDFG +K + +N ILP W
Sbjct: 2081 MFINGNGFDFGSRQKESTPINDVILPPW 2108
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.7 bits (61), Expect = 0.76
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -1
Query: 306 DVPSKQSVYPEQHVVDPQQQN 244
DV +K S + E+H++DP+++N
Sbjct: 603 DVNTKDSSFAERHIIDPEKRN 623
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 368 IFSFLILRIFKYCINTSPSIRMFLQSSQYILSNTLLIP 255
I SF++L +F+ + S +FL + ++S LLIP
Sbjct: 505 IISFILLAVFRPFVGFKNSFCVFLVALTRVVSFALLIP 542
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 303 HPDAWTRVDTILEYSQNQETKYYALQILEQVILTR--WKILPRNQCEGIKKYIVGLIIKN 476
H D + + T+L S+N TK +L++L +++L R ++ R ++ +++++
Sbjct: 202 HFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAENLKLMMILLRD 261
Query: 477 SSDPVTMESNKVY 515
S + E+ V+
Sbjct: 262 KSKNIQFEAFHVF 274
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 365 ILCITNIRTSNTNEMENITKKSV*GYKKIY 454
ILCI+N R T E + K+ YKK++
Sbjct: 788 ILCISNGRIVETGTHEELIKRDGGAYKKMW 817
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 105 FWKKGNKLTK*IYFTRMATLEQQASKLLDFNQ 200
FW+KG++ + + + A L QQ L F+Q
Sbjct: 277 FWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQ 308
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 353 ILRIFKYCINTSPSIRMFLQSSQYILSNTLLIPNS 249
++RIF +NT S+ SS+ I NT +PN+
Sbjct: 257 VVRIFDSHVNTRYSMSWDCYSSKNIPKNTEALPNN 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,721
Number of Sequences: 5004
Number of extensions: 55657
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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