Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_F04
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0143 - 944169-947273 31 1.0
02_01_0281 - 1879519-1879605,1880761-1880851,1881343-1881849,188... 30 1.8
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687... 29 3.2
02_05_0716 - 31177877-31177943,31178028-31178104,31178396-311785... 29 3.2
01_06_0492 - 29769252-29769330,29769432-29769508,29769604-297697... 29 3.2
11_08_0084 + 28260647-28262575 29 4.2
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 28 5.5
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157... 28 7.3
>05_01_0143 - 944169-947273
Length = 1034
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 207 DINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQETKYYALQ 380
DI L+D + + +A +++ QDI L+E+ + W + T + Q +TKY LQ
Sbjct: 786 DIKLIDVVK--MENASPLEEKFRQDIDALLEENLEFWMKFSTSFQQIQGFQTKYEQLQ 841
>02_01_0281 -
1879519-1879605,1880761-1880851,1881343-1881849,
1881939-1882009,1882102-1882181,1882287-1882464
Length = 337
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 162 LEQQASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTAL 296
+E SKL K D+N LD +VG + A +A IL ++
Sbjct: 187 MENTNSKLGKLGMKTDLNRLDKLVGAIMEAAPISSAIASRILVSV 231
>06_01_0895 +
6877386-6878475,6878577-6878838,6878932-6879017,
6879117-6879274,6879554-6879630,6879719-6879785
Length = 579
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +3
Query: 369 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIK-------NSSDPVTMESNKVYLKKL 527
Y IL + W+I +QC GI +++ + ++++P TM + L
Sbjct: 5 YVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTL 64
Query: 528 NMILIQVLKREWPH 569
+++ L W H
Sbjct: 65 QKLIVLALLTLWSH 78
>02_05_0716 -
31177877-31177943,31178028-31178104,31178396-31178553,
31178647-31178732,31178847-31180303
Length = 614
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +3
Query: 369 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIK-------NSSDPVTMESNKVYLKKL 527
Y IL + W+I +QC GI +++ + ++++P TM + L
Sbjct: 5 YVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTL 64
Query: 528 NMILIQVLKREWPH 569
+++ + W H
Sbjct: 65 QKLMVLAMLTAWSH 78
>01_06_0492 -
29769252-29769330,29769432-29769508,29769604-29769761,
29769879-29769964,29770058-29770085,29771223-29771730
Length = 311
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 369 YALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILIQV 548
Y IL + + WK+ QC GI K++ I S V + + Y + +I +
Sbjct: 18 YVAMILAYLSIKWWKLFTPEQCSGINKFVAKFSIPLLSFQV-ISTTDPYDMNIKLIYSDI 76
Query: 549 LKR 557
L++
Sbjct: 77 LQK 79
>11_08_0084 + 28260647-28262575
Length = 642
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 210 INLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAW 317
++L + ++ C + D +R A ++L +K+H AW
Sbjct: 261 VDLHNLLLHCAQAVATDDRRSAHELLRQIKQHSSAW 296
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 156 ATLEQQASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRV---AQDILTALKEHPDAWTRV 326
A E +AS + N +DI I GC+ Q++ +++ L + H D T
Sbjct: 728 AATEHEASNSGE-NSYIDIGGFGAISGCVQKMNSSNQQIGSPSEEDLGSWGHHSDPSTVP 786
Query: 327 DTILEYSQNQETKY 368
DTIL+ S E +
Sbjct: 787 DTILQCSSGDEVSF 800
>05_07_0226 -
28515052-28515064,28515426-28515502,28515610-28515767,
28515852-28515937,28516048-28516351,28516410-28517490
Length = 572
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Frame = +3
Query: 408 WKILPRNQCEGIKKYIVGLIIK-------NSSDPVTMESNKVYLKKLNMILIQVLKREW 563
W +L QC GI +++ + + +SSDP M V L +L+ W
Sbjct: 31 WGVLTPEQCSGINRFVAVIAVPLLSFHFISSSDPYAMNLRFVAADTLQKVLVLAALAAW 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,669
Number of Sequences: 37544
Number of extensions: 287464
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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