Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_F04
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...   163   1e-40
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score =  163 bits (395), Expect = 1e-40
 Identities = 75/157 (47%), Positives = 108/157 (68%)
 Frame = +3

Query: 171 QASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQ 350
           +A +      ++D+ LLD +V  +    G +Q  A  IL +LKE  D+WT+VD IL+YSQ
Sbjct: 11  EAKRQFAQGDRIDVTLLDQVVEIMNRMSGKEQAEANQILMSLKEERDSWTKVDAILQYSQ 70

Query: 351 NQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLN 530
             E+KY+ALQILE VI  +WK LP+ Q EGIK YI+  + + SSD   ME +++ L KLN
Sbjct: 71  LNESKYFALQILETVIQHKWKSLPQVQREGIKSYIITKMFELSSDQSVMEQSQLLLHKLN 130

Query: 531 MILIQVLKREWPHNWETFISDIVGASKTNESLCQNNM 641
           ++L+Q++K++WP  W TFI+DIV +SK NE++C NNM
Sbjct: 131 LVLVQIVKQDWPKAWPTFITDIVDSSKNNETVCINNM 167


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 137  NIFYQNGNLRTTGI*TFGFQSKIGHQFIGQ 226
            +I YQ GN  T G+   GF    G+QF G+
Sbjct: 1382 HIPYQGGNFNTRGVSRGGFSYTSGNQFRGR 1411


>U70845-5|AAB09103.1|  219|Caenorhabditis elegans Hypothetical
           protein F22H10.6 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 138 FI*LICSLFSKIKIILINPHSFLTLYNTEKIICGAINLTH 19
           F  LI  LF K+KI+  N H + +  NT    C A  L H
Sbjct: 173 FFPLITKLF-KLKILSENDHFYYSTLNTNANSCAAPELHH 211


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 105 FWKKGNKLTK*IYFTRMATLEQQASKLLDFN 197
           FW +GNKL        +  L Q  S  LDFN
Sbjct: 257 FWARGNKLDNWSIMDELVELPQLNSVYLDFN 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,558
Number of Sequences: 27780
Number of extensions: 299781
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)