Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_F02
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 145 3e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 144 8e-36
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 3.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 5.7
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 5.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 5.7
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51... 24 9.9
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 24 9.9
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 24 9.9
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 24 9.9
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 145 bits (352), Expect = 3e-36
Identities = 74/134 (55%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Frame = +3
Query: 60 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 239
ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 240 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 419
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ RS+ +
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116
Query: 420 AYRRTPAA-PGVAP 458
YRR G AP
Sbjct: 117 GYRRAEKKDDGAAP 130
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 144 bits (348), Expect = 8e-36
Identities = 72/133 (54%), Positives = 92/133 (69%)
Frame = +3
Query: 60 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 239
ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 240 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 419
W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR R GRP+ R++ D
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASADAG 116
Query: 420 AYRRTPAAPGVAP 458
R G AP
Sbjct: 117 YRRAEKKDEGAAP 129
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 418 DLSSAERAGASGRPTGPRRT 359
DLSSAER A GRP + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 142 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 234
+H + L+ RFL + L ++C H+ +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 5.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 340 RLSVAGTISGGRCKNILKY 284
R+ G+++GG CK LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 312 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 419
P I P ++ V TVR G PD P+ S R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
L51-b|Schizosaccharomyces pombe|chr 2|||Manual
Length = 225
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 424 YADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCK 299
+ DL RA + RP PR + V ++ + I+ +C+
Sbjct: 3 FPDLLRCSRAVSLARPDLPRNSPDVYDTKIPILQAITAKKCQ 44
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 279 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 383
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 310 LLKLCLQHLSAQYVQRQY 363
LLK+CL +SA Y+ Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +3
Query: 144 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIF 299
AP++T+ + N ++ K + KS + + +W+ T G+EY++ F
Sbjct: 37 APRYTK-SYMHNAEIYKCFPT-KSNYILSVSYDGYVKFWHKTPNGVEYIKEF 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,423
Number of Sequences: 5004
Number of extensions: 34980
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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